Query= MSMg01no343_a01.b1 MSMg01no343_a01.b1 CHROMAT_FILE:
MSMg01no343_a01.b1 PHD_FILE: MSMg01no343_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:40 2005
(317 letters)
>mm_chr11_48507368_48508084
Length = 717
Score = 569 bits (294), Expect = e-166
Identities = 310/322 (96%), Gaps = 12/322 (3%)
Strand = Plus / Minus
Query: 1 aggtagatactattattctgaaaaataaatgaagtagtttgcccactactaggtattgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aggtagatactattattctgaaaaataaatgaagtagtttgcccactactaggtattgat 457
Query: 61 agttcagggtctcaagccaggcaaccacaaggtagaactcaaatcactagccactatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agttcagggtctcaagccaggcaaccacaaggtagaactcaaatcactagccactatgat 397
Query: 121 acaacatctcctgtagctcttctttctcttctctccagccttgtgttatattctgcctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 acaacatctcctgtagctcttctttctcttctctccagccttgtgttatattctgcctta 337
Query: 181 aactgttttctcacctcagggaggttggagcaaagttttcaggactttatcttttcaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aactgttttctcacctcagggaggttggagcaaagttttcaggactttatcttttcaaca 277
Query: 241 actgatgtttttttt------gttggggaatagaaggatttataacctggggaatatatg 294
||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 276 actgatg------ttggaagggttggggaatagaaggatttataacctggggaatatatg 223
Query: 295 tcagtgtatgtgtgtgtgtgtg 316
||||||||||||||||||||||
Sbjct: 222 tcagtgtatgtgtgtgtgtgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_a01.g1 MSMg01no343_a01.g1 CHROMAT_FILE:
MSMg01no343_a01.g1 PHD_FILE: MSMg01no343_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:40 2005
(402 letters)
>mm_chr11_48354240_48355041
Length = 802
Score = 735 bits (380), Expect = 0.0
Identities = 392/396 (98%)
Strand = Plus / Plus
Query: 1 tccacgactctctcgcctgttatgaaagtcgattttgcacatcacaatgctggagagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccacgactctctcgcctgttatgaaagtcgattttgcacatcacaatgctggagagata 260
Query: 61 aaataaataaataaacatgaaagcatgctcacacctggttcatttaagtgcactgacctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaataaataaataaacatgaaagcatgctcacacctggttcatttaagtgcactgacctt 320
Query: 121 tctacagtgctttgattataccttcccaccctctgctgtgtatcaaagcccaactgctta 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctacagtgctctgattataccttcccaccctctgctgtgtatcaaagcccaactgctta 380
Query: 181 aaatccgaaatacatcacctcccagagtccagtgcggttggtccctacttatgcagcagt 240
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 aaaaccgaaatacatcacctcccagagtccattgcggttggtccctacttatgcagcagt 440
Query: 241 agttgcttgaacatgaagagtaacccggggcagacatgttcctctccctaaaccaagtcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttgcttgaacatgaagagtaacccggggcagacatgttcctctccctaaaccaagtcc 500
Query: 301 tctgcatatccccattgctacttcctgaaaggttattctgtttcatgtttgatactgagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgcatatccccattgctacttcctgaaaggttattctgtttcatgtttgatactgagt 560
Query: 361 tgggatgattgtaatccaccatgtaagaatggttaa 396
|||||||| |||||||||||||||||||||||||||
Sbjct: 561 tgggatgactgtaatccaccatgtaagaatggttaa 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
