BAC Information

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BAC

Clone NameMSMg01-344A09
Chromosome11 (Build37)
Map Location 115,245,450 - 115,419,483
singlet/doubletdoublet
Overlap geneCdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2
Upstream gene4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik
Downstream geneNup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344A09.T7 (MSMg01no344_a09.b1)MSMg01-344A09.TJ (MSMg01no344_a09.g1)
ACCAG457188AG457189
length740722
length of high quality
(start - end)		276 (49 - 324)521 (77 - 597)
definitionCHROMAT_FILE: MSMg01no344_a09.b1 PHD_FILE: MSMg01no344_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:05 2005CHROMAT_FILE: MSMg01no344_a09.g1 PHD_FILE: MSMg01no344_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,419,212 - 115,419,483)(115,245,450 - 115,245,970)
sequence
AAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGATCTTTCTCCGCACCTAGAAAGTCCTGGAATTACATTAT
GCAATCCACAGCCAGGTAGATTGCTTGACCCCCATCCCCATTTTTGCTTA
GTTTTAGATTTACATTATTTTATGTGTCTGAGTATTTTGCCTGCACGTGT
GATGTCTACTGTGTGTGTGCCTGGGGCCTTCCCAGACCCTAAGCAAATGT
CAGATTCCCCAAAACTGGAGTTATAGATGGTATAAGCACTGAAACCAAAC
CCAGACCCTCCTCTAGAGCTACACTCTCTTTAAACAAATACAGAACCAGC
TCTCCAGCCTTCTTTTGTTTTGATTTTTGTTGTTGTTGATGTTATGCTTG
TTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTCTGACTCTGGAGCCCTG
TCTGTCCTGGAACTCACTCTGTACACCAGGCTGGCCTTGAACTCAGAAAT
TCACCTTGCTCTGCCTTCCATGTGGTGGAATTACAATAAGGCTCTGTCTC
CTTGTTCCTCATGGTGTTTGTAATACCCCGCCTGTGTCTATTTTATTTGT
TTTTGTTCTTTGTCTATTTTCGTTCTTTTTTTCTCTCCACCTCTTGGGTC
TTTTTTTTTTTTCTTAAATCTTTCTTATATCATTTTTTTCATTTAATCCT
TCTATTTCTCTTTTCCTTTTCTTTTATAAATCAATTTCCC

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXGGAGGAGACAGAAGTGGGAAGTTA
AAGTAACCACTGTGGGACAGCATAGTCCCCTCAGCAAAGAGCTCTGAAGG
AGGGCACGCTGGGAGAAGGGATGTTTGTAACCAAGGCCTGGGGCCAAATG
AAGGACAGGAAGTAGGGGACAAAGGAAGCCTAGCCACGTAGCTCTGCATG
CCAGGCCAGGAGAACTGGGCAATGGGGTGGAGCGTCTGCCAAAAGACAGT
CATGTCAGAGGGCCCGTTTGTGTTCCACTTTGTACCCAGTCCCCAAATTC
TGTCCTTCCCATCCGCCCAGACCCACAGAGGGATTTCTGACCCCACACAT
TGGAGTATCCTTCCTGCCCACTTGCCCTTACCCTGGGCCAAGCCCCAACT
TCACTCCCCAAAGAAATTGTCCCCAGAGATTGTGTTTGGCTTTAGTGTGG
CTCTGTCCCAGAGGCAGGAGGCGGGGGTCTTAGATTTGCTAGATTCCTTC
CACCCACTAACTTGAGCACCTATAAAAATAGTAAGAAGTCATGAATTAAT
TATAAGCGCTGGCTCTTTCTTCGCCCCCCCCCTCCCCCACCTGTGACCAG
CTCTGTCCAGGCTGAAGGATGGCTGCTGAGTCACAGATTTTGAGAGCTGA
CCTCCCTTCCTGCCTAAGCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_a09.b1 MSMg01no344_a09.b1 CHROMAT_FILE:
MSMg01no344_a09.b1 PHD_FILE: MSMg01no344_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:05 2005
         (276 letters)



>mm_chr11_115419168_115419843
          Length = 676

 Score =  464 bits (240), Expect = e-135
 Identities = 264/272 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgatctttctccgcacctagaaagtcctggaattacattatgcaatccacagc 64
           ||||||||||||   |||| ||||||||||||||||||||||||||||  ||||||||||
Sbjct: 316 gaattcctgatcaccctccacacctagaaagtcctggaattacattatataatccacagc 257

                                                                       
Query: 65  caggtagattgcttgacccccatccccatttttgcttagttttagatttacattatttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 caggtagattgcttgacccccatccccatttttgcttagttttagatttacattatttta 197

                                                                       
Query: 125 tgtgtctgagtattttgcctgcacgtgtgatgtctactgtgtgtgtgcctggggccttcc 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 196 tgtgtctgagtattttgcctgcatgtgtgatgtctactgtgtgtgtgcctggggccttcc 137

                                                                       
Query: 185 cagaccctaagcaaatgtcagattccccaaaactggagttatagatggtataagcactga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 136 cagaccctaagcaaatgtcagattccccaaaactggagttatagatggtatgagcactga 77

                                           
Query: 245 aaccaaacccagaccctcctctagagctacac 276
           ||||||||||||||||||||||||||||||||
Sbjct: 76  aaccaaacccagaccctcctctagagctacac 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no344_a09.g1 MSMg01no344_a09.g1 CHROMAT_FILE:
MSMg01no344_a09.g1 PHD_FILE: MSMg01no344_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:05 2005
         (521 letters)



>mm_chr11_115245250_115246170
          Length = 921

 Score =  984 bits (509), Expect = 0.0
 Identities = 518/521 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaggagacagaagtgggaagttaaagtaaccactgtgggacagcatagtcccctcagca 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaggagacggaagtgggaagttaaagtaaccactgtgggacagcatagtcccctcagca 260

                                                                       
Query: 61  aagagctctgaaggagggcacgctgggagaagggatgtttgtaaccaaggcctggggcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagagctctgaaggagggcacgctgggagaagggatgtttgtaaccaaggcctggggcca 320

                                                                       
Query: 121 aatgaaggacaggaagtaggggacaaaggaagcctagccacgtagctctgcatgccaggc 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 aatgaaggacaggaagtaggggacaaaggaagcctagccacgtagctccgcatgccaggc 380

                                                                       
Query: 181 caggagaactgggcaatggggtggagcgtctgccaaaagacagtcatgtcagagggcccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggagaactgggcaatggggtggagcgtctgccaaaagacagtcatgtcagagggcccg 440

                                                                       
Query: 241 tttgtgttccactttgtacccagtccccaaattctgtccttcccatccgcccagacccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgtgttccactttgtacccagtccccaaattctgtccttcccatccgcccagacccac 500

                                                                       
Query: 301 agagggatttctgaccccacacattggagtatccttcctgcccacttgcccttaccctgg 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 agagggatttctgaccccacacattggagtatccttcctgcccgcttgcccttaccctgg 560

                                                                       
Query: 361 gccaagccccaacttcactccccaaagaaattgtccccagagattgtgtttggctttagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccaagccccaacttcactccccaaagaaattgtccccagagattgtgtttggctttagt 620

                                                                       
Query: 421 gtggctctgtcccagaggcaggaggcgggggtcttagatttgctagattccttccaccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtggctctgtcccagaggcaggaggcgggggtcttagatttgctagattccttccaccca 680

                                                    
Query: 481 ctaacttgagcacctataaaaatagtaagaagtcatgaatt 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaacttgagcacctataaaaatagtaagaagtcatgaatt 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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