NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTAGATAAATCGCTTATGAGTGAAAAATTCATTATACATTTG
GTTGGTCAACTTTTATTTGTTTTGTAAAATCTCCAAAATAGTTCCCCTAA
TGGCTGTATTAATTTTCACCTCCACCAACATTGAATAAAAATTCCTTTTT
CTTCATATGTTCTCCAATATCTGTTGTAAGATTTGTTGATGAAAACCTTT
CTGGCTGAGATGAAGGGATATGTCAGAGTAGTTTTAATTTGCATTTCCCT
ATTGGTTAAGAATATTGATCACCTTTTAGAGTATTTACTGACCATTCTAT
TTCTTGTAAACTGACTATTCTGTTCACTTTCCCATTCATTGGCTGACTGG
CAATTGTCTTTTCTTGGCATTTCATTTCTGCAGTTCTTTGCAAATTCTGG
ATACTAGCTCCTTTTTTGAAGTGGAGCTGCTAAAGGTTGGGTTTTTCAAT
AACTCCCAAGCTGATTGAGTTAGATACATCTTCAAGGTAGTGTTAATTTG
CTTTTCCCTAATAGCTAGGTTAAGTTTAATATTTTTCATGGGNTTATTAG
NTATCTGGACTTCCTCCTTTTGAAAAATCCATAATTAACTTGATTATTCC
ATTTAATAACCTGGGTGAAATTAAGGCCTTACCATTAATTTATTTTTAAA
TCCTTGGATAATCCCTTTAATAAAACCCCCCTCCAAATTTGTAAAAAACA
AAAACTTTTTCCCCCAATTGAAAGGGGTATTN

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAAAAGGTTGGAGCTTGAAGCAGCTGGTCATACT
GTATCCACAATGAAGAAACAAAGAGCTGTGAATGCATACTAGTGCTTAGT
TCATTTGCCCATTTATACAATCCTGGCCCACCTGCCCAGAAAATGGTCCT
ACCCACAATTAAGATGGGTTGTGCCACATAAATTAATATAATCAAGATAA
TTCCTCATAGGCATACCCACCCAGAGGACAAGTTCCTGATGAATCTAGAC
CCTGTCAAGTCCAATAATATTCAAACTTAATTTTGGAATTGTGCTGACAT
TTTCATAGTGAATTAATAGAACTCTTGTGGAAAGTGGTTTTTCATTATTT
ACTTCAACAGGTTGTTTATTAAATAAATAAATAAATAAATAAATAAATAA
ATAAACAAACAAACAAACTAAGTAAATGGGAGTACACATTTTATAAGGCA
TCTTAATGGACTTCCAGCTCATTGAGATACAACCCTTATTCATACTCAGG
TAAATGCGCTGATCAGTTTATATCATCTTGATGCATATTGGAGTGGTCTG
GGAAGGGAGAACCTNCATGGATACACTGTCCCTATCAGACTTTTAGGTGG
GCATAGCTGTGAGAAATATTCCTTTTTTTTCCTTTTAAAATTATCCCCTT
AATTTACCCCCCCAAGATAGCCGATTTTCCCTTACCCCCCACAAAATCCC
TCTCTAATTCC

Query= MSMg01no344_d18.g1 MSMg01no344_d18.g1 CHROMAT_FILE:
MSMg01no344_d18.g1 PHD_FILE: MSMg01no344_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:21 2005
         (531 letters)



>mm_chr11_13522568_13523498
          Length = 931

 Score =  965 bits (499), Expect = 0.0
 Identities = 526/539 (97%), Gaps = 9/539 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaaggttggagcttgaagcagctggtcatactgtatccacaatgaagaaacaaagagc 60
           |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 796 aaaaaggttggagcttgaagcagctggtcacactgtatccgcaatgaagaaacaaagagc 737

                                                                       
Query: 61  tgtgaatgcatactagtgcttagttcatttgcccatttatacaatcctggcccacctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgtgaatgcatactagtgcttagttcatttgcccatttatacaatcctggcccacctgcc 677

                                                                       
Query: 121 cagaaaatggtcctacccacaattaagatgggttgtgccacataaattaatataatcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cagaaaatggtcctacccacaattaagatgggttgtgccacataaattaatataatcaag 617

                                                                       
Query: 181 ataattcctcataggcatacccacccagaggacaagttcctgatgaatctagaccctgtc 240
           ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 616 ataattcctcataggcataccca-ccagaggacaagttcctgatgattctagaccctgtc 558

                                                                       
Query: 241 aagtccaataatattcaaacttaattttggaattgtgctgacattttcatagtgaattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aagtccaataatattcaaacttaattttggaattgtgctgacattttcatagtgaattaa 498

                                                                       
Query: 301 tagaactcttgtggaaagtggtttttcattatttacttcaacaggttgtttat----taa 356
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||    |||
Sbjct: 497 tagaactcttgtggaaagtggtttttctttatttacttcaacaggttgtttattaaataa 438

                                                                       
Query: 357 ataaataaataaataaataaataaataaataaacaaacaaacaaac----taagtaaatg 412
           ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 437 ataaataaataaataaataaataaataaataaacaaacaaacaaacaaagtaagtaaatg 378

                                                                       
Query: 413 ggagtacacattttataaggcatcttaatggacttccagctcattgagatacaaccctta 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggagtacacattttataaggcatcttaatggacttccagctcattgagatacaaccctta 318

                                                                      
Query: 473 ttcatactcaggtaaatgcgctgatcagtttatatcatcttgatgcatattggagtggt 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttcatactcaggtaaatgcgctgatcagtttatatcatcttgatgcatattggagtggt 259


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)