Query= MSMg01no344_i01.b1 MSMg01no344_i01.b1 CHROMAT_FILE:
MSMg01no344_i01.b1 PHD_FILE: MSMg01no344_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:42 2005
(550 letters)
>mm_chr11_33430223_33431171
Length = 949
Score = 932 bits (482), Expect = 0.0
Identities = 538/574 (93%), Gaps = 28/574 (4%)
Strand = Plus / Minus
Query: 4 ggaattcactctgtacaccaggctggccttaaactcacagagatctgcctgcctctgttt 63
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 599 ggaattcactctgtagaccaggctggccttaaacgcacagagatctgcctgcctctgttt 540
Query: 64 cttgagtgctggaattaaagacatgtacccctacctctctgcaaagcatagatgtttaat 123
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 539 cttgagtgctgggattaaagacatgcacccctacctctctgcaaagcatagatgtttaat 480
Query: 124 tttacagcaggagcgtatgttctcactgcgggcgcggctcgcgatcagctctaaggcttc 183
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 479 tttacagcaggagcgtatgttctcactgcgggcgcggctcg-ggtcagctctaaggcttc 421
Query: 184 acctgggcgcttgttggagattcagactagacatcaacttgagtcagcacacgcttggac 243
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 420 acctgggcgcttgctggagattcagactagacatcgacttgagtcagcacacgcttggac 361
Query: 244 agtggcttctcaggtgatgtgcctgtgtgctgtgtttcctctgcctgtaggc-------- 295
||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 360 agtggcttctcaggtgatgggcctgtgtgctgtgtttcctctgcctgtaggctgttaata 301
Query: 296 -------------------tgtgctgtcatggtcaaagctaaagcagcgtctgggacatt 336
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aaagaaaggggcatggagttgtgctgtcatggtcaaagctaaagcagcgtctgggacatt 241
Query: 337 tagtttaaaactcagaaagatcccattatacacatacaattttataatgtaggaaacaaa 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tagtttaaaactcagaaagatcccattatacacatacaattttataatgtaggaaacaaa 181
Query: 397 ttcggagactgagcatttttctagtaccacgaagtaatatgactattatgcttttctctt 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ttcggagactgagcatttttctagtaccacgaagtaatatgactattatgcttttctctt 121
Query: 457 gaaatgctaaaactcaccacctttccactggtctcctcggctctccacttcagccccaca 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gaaatgctaaaactcaccacctttccactggtctcctcggctctccacttcagccccaca 61
Query: 517 ttcaccttatctttccgactgtcccaccagcaaa 550
||||||||||||||||||||||||||||||||||
Sbjct: 60 ttcaccttatctttccgactgtcccaccagcaaa 27
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 949
Length adjustment: 10
Effective length of query: 540
Effective length of database: 939
Effective search space: 507060
Effective search space used: 507060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_i01.g1 MSMg01no344_i01.g1 CHROMAT_FILE:
MSMg01no344_i01.g1 PHD_FILE: MSMg01no344_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:42 2005
(440 letters)
>mm_chr11_33265040_33265879
Length = 840
Score = 426 bits (220), Expect = e-123
Identities = 226/228 (99%)
Strand = Plus / Plus
Query: 1 atattccaatagtaacgattcttttccatttcttaacaccaatagtttgggtaaatgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattccaatagtaacgattcttttccatttcttaacaccaatagtttgggtaaatgact 260
Query: 61 gacaagtattctcaaatctaagaaattaatcactggtagttttctggctaaaaaagagag 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaagtattctcaaatttaagaaattaatcactggtagttttctggctaaaaaagagag 320
Query: 121 acatgcaaccacacgaaaggcagatggtatggcaggcaccgttgaagtgaggactctgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatgcaaccacacgaaaggcagatggtatggcaggcaccgttgaagtgaggactctgac 380
Query: 181 tgttaagagatctacctgccacttgcagttctgttggactcttattag 228
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttaagagatctacctgccacttgcagttctgttggactcttattag 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
