BAC Information

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BAC

Clone NameMSMg01-346C06
Chromosome11 (Build37)
Map Location 119,500,643 - 119,655,754
singlet/doubletdoublet
Overlap gene4932417H02Rik
Upstream geneD11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1
Downstream geneChmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346C06.T7 (MSMg01no346_c06.b1)MSMg01-346C06.TJ (MSMg01no346_c06.g1)
ACCAG458798AG458799
length772735
length of high quality
(start - end)		375 (40 - 414)467 (69 - 535)
definitionCHROMAT_FILE: MSMg01no346_c06.b1 PHD_FILE: MSMg01no346_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:45 2005CHROMAT_FILE: MSMg01no346_c06.g1 PHD_FILE: MSMg01no346_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,655,384 - 119,655,754)(119,500,643 - 119,501,109)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
AAACTGTACCTGTGAGCTAAACTAAATCTTTTCTCCCCTTGGTTGCTTTA
TCATAGCAACAGAAAAAGACCACAGGACAACCAAGCAGTATGGGTGCTAA
CTCAAAGGTTAGTCTTCCCCAAATTATTCCCTTACCCACATGCACTTTCA
CATTTCAGTACATTCTCTGTGCTGTAACAACAGTGTCTTGGCTGGCCTCA
GGCTTGGCACAATGCACTATGCTCATGTGCCCATGTGTGCTTGGTTGGTC
AATGCTAGAATCACTACTGAGGGATCACAATGCTCTGTGTGCACAAAACA
AACCTCCAGCTTCCAGGAAAATGGCACTGTCATATCAGAGACATGCTTTT
CCCACAAAGCAAGGACATAAGAAGATAGTCATAACATGATACAAGTCCTA
CTATCTAAAATCCACTATGAATTCTGGCGCACATCCCCTGGCTGGCTCAT
TGCGCATTGCAGCAAACGAAGTGTAACGCTCCGAGACCCCGTGTAAGGTT
ACGTTTGTTTGTTTGGCCATTAATGCCTTAATATATAAAAAAACGCTTGT
AAGGACCCCCCCCTCTCTAACGGAATTTCTTTGGCCCGCTCCTAAAATTT
CCTATGTTTTTTTTATCACCCCCTTTCCTCCCCCCCTCTTTTATTACAAG
TTTTTCATTTGCAATCCACAATAATTTCTTCCTTCTACATATCTCCCTGC
CCTATATTCATCCCTTTCCTAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTAGAATTTTGTGTGAAGTAATGGGCTAGAA
CCGAACTTCCCTAGCTGATGTTCTGTGTCGACACTAAATGCTGCCTGGGA
GTTGCTTTAGTGAGAGCACCAATGAATTGTAATTAAATATTAAGAACCTA
TAAAATATATTTGCATTACAAAAGTAGTTAAAGTAATTTTCTCAGTCTTC
ATAAATTTAGATAATAGTCATTAAACAAAATAATGAGCTAGTCTTTGAAT
GGAAGAGGCAAAGAAGCATAAAATTGCCCCAGGAGCTGGGCTGCTGATGA
CACAATTTTGTGGCTGCAGAATAAAAGCCTGTGGGGTTGACAGATTCTTG
ATGCCTGACTGTGTGCTGCCCACTGCAACAGAAATGTCACCATTAGGTTA
GGGATAGTTTCAGAGATGTGTTAAACTGGCTCATTGTGACTTCTCAAGTT
TCCTAACTTGTTCCTGTTGTGATCCATTCTTAGGTGGGTGCTAAGCAAAA
CACCAGTTGAGCCCGTCGGTGGTCGTCGTCTTCTTCTTCTTCCTCTTCTT
CTTCTTCTTCCCTCTCTTCTTCCCCTTCTTCTTCTTCCCCTTTCCCTCCT
TTCTTCCTCTTCTCCTCCTCCTCCTCTTTCTTCCCTCTCCCCTTTTTCCT
CTCTTTCCTCACTTTTTTCTCCATCTCTCTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_c06.b1 MSMg01no346_c06.b1 CHROMAT_FILE:
MSMg01no346_c06.b1 PHD_FILE: MSMg01no346_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:45 2005
         (375 letters)



>mm_chr11_119655101_119655875
          Length = 775

 Score =  687 bits (355), Expect = 0.0
 Identities = 367/371 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaactgtacctgtgagctaaactaaatcttttctccccttggttgctttatca 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gaattctaaactggagctgtgagctaaactaaatcttttctccccttggttgctttatca 595

                                                                       
Query: 65  tagcaacagaaaaagaccacaggacaaccaagcagtatgggtgctaactcaaaggttagt 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tagcaacagaaaaagaccgcaggacaaccaagcagtatgggtgctaactcaaaggttagt 535

                                                                       
Query: 125 cttccccaaattattcccttacccacatgcactttcacatttcagtacattctctgtgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cttccccaaattattcccttacccacatgcactttcacatttcagtacattctctgtgct 475

                                                                       
Query: 185 gtaacaacagtgtcttggctggcctcaggcttggcacaatgcactatgctcatgtgccca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gtaacaacagtgtcttggctggcctcaggcttggcacaatgcactatgctcatgtgccca 415

                                                                       
Query: 245 tgtgtgcttggttggtcaatgctagaatcactactgagggatcacaatgctctgtgtgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tgtgtgcttggttggtcaatgctagaatcactactgagggatcacaatgctctgtgtgca 355

                                                                       
Query: 305 caaaacaaacctccagcttccaggaaaatggcactgtcatatcagagacatgcttttccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 caaaacaaacctccagcttccaggaaaatggcactgtcatatcagagacatgcttttccc 295

                      
Query: 365 acaaagcaagg 375
           |||||| ||||
Sbjct: 294 acaaagtaagg 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no346_c06.g1 MSMg01no346_c06.g1 CHROMAT_FILE:
MSMg01no346_c06.g1 PHD_FILE: MSMg01no346_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:45 2005
         (467 letters)



>mm_chr11_119500443_119501309
          Length = 867

 Score =  895 bits (463), Expect = 0.0
 Identities = 466/467 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagaattttgtgtgaagtaatgggctagaaccgaacttccctagctgatgttctgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagaattttgtgtgaagtaatgggctagaaccgaacttccctagctgatgttctgtgt 260

                                                                       
Query: 61  cgacactaaatgctgcctgggagttgctttagtgagagcaccaatgaattgtaattaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgacactaaatgctgcctgggagttgctttagtgagagcaccaatgaattgtaattaaat 320

                                                                       
Query: 121 attaagaacctataaaatatatttgcattacaaaagtagttaaagtaattttctcagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaagaacctataaaatatatttgcattacaaaagtagttaaagtaattttctcagtct 380

                                                                       
Query: 181 tcataaatttagataatagtcattaaacaaaataatgagctagtctttgaatggaagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcataaatttagataatagtcattaaacaaaataatgagctagtctttgaatggaagagg 440

                                                                       
Query: 241 caaagaagcataaaattgccccaggagctgggctgctgatgacacaattttgtggctgca 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaagaagcagaaaattgccccaggagctgggctgctgatgacacaattttgtggctgca 500

                                                                       
Query: 301 gaataaaagcctgtggggttgacagattcttgatgcctgactgtgtgctgcccactgcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaataaaagcctgtggggttgacagattcttgatgcctgactgtgtgctgcccactgcaa 560

                                                                       
Query: 361 cagaaatgtcaccattaggttagggatagtttcagagatgtgttaaactggctcattgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagaaatgtcaccattaggttagggatagtttcagagatgtgttaaactggctcattgtg 620

                                                          
Query: 421 acttctcaagtttcctaacttgttcctgttgtgatccattcttaggt 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttctcaagtttcctaacttgttcctgttgtgatccattcttaggt 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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