Query= MSMg01no346_d11.b1 MSMg01no346_d11.b1 CHROMAT_FILE:
MSMg01no346_d11.b1 PHD_FILE: MSMg01no346_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:51 2005
(340 letters)
>mm_chr11_114265097_114265842
Length = 746
Score = 592 bits (306), Expect = e-173
Identities = 333/346 (96%), Gaps = 10/346 (2%)
Strand = Plus / Plus
Query: 1 attcacctttatccagac-caaattcacacacagccatgctagggaccttcctgggacct 59
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcacctttatccagacacaaattcacacacagccatgctagggaccttcctgggacct 260
Query: 60 ctgcttgga----gggcagcagccccaggagttccctctgtgggcccggcagaccatgtt 115
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcttggaccttg--cagcagccccaggagttccctctgtgggcccggcagaccatgtt 318
Query: 116 tgtgacaagccatggccttgactgccatgatctgcctccccgtattagtgttcccagatg 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 319 tgtgacaagccatggccttgactgccatgatctgcctccccgtattagtgttcccagagg 378
Query: 176 aatgagagaaagaaaactagaaattgtccaaaaagatccagaactctctagaatgttcca 235
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatgagaaaaagaaaactagaaattgtccaaaaagatccagaactctctagaatgttcca 438
Query: 236 gaaatctacagtcttgtata---acacagcagtgctataccagtgctatggttggagcat 292
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 439 gaaatctacaggcttgtatagtaacacagcagtgctataccagtgctatggttggagcat 498
Query: 293 ggctgtctgactagataaacttggcactctgttttatggagtctgg 338
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggctgtctgactagataaacttggcactctgttttatggagtctgg 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 746
Length adjustment: 9
Effective length of query: 331
Effective length of database: 737
Effective search space: 243947
Effective search space used: 243947
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_d11.g1 MSMg01no346_d11.g1 CHROMAT_FILE:
MSMg01no346_d11.g1 PHD_FILE: MSMg01no346_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:51 2005
(282 letters)
>mm_chr11_114503688_114504369
Length = 682
Score = 491 bits (254), Expect = e-143
Identities = 278/295 (94%), Gaps = 15/295 (5%)
Strand = Plus / Minus
Query: 1 agtcgaggatacagttcaatggagaaggactccccaagcatgcacgaagtcctgggttcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 agtcgaggatacagttcaatggagaaggactccccaagcatgcacgaagtcctgggttcg 587
Query: 61 atcctcagcactgaaaaaaaaaaaaaagaaattaaagtattgatctgccatgaatcagaa 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 atcctcagcactg--aaaaaaaaaaaagaaattaaagtattgatctgccatgaatcagaa 529
Query: 121 gcgaagactccactgtctgctacctgaggaagc-------------caaagaagtatgga 167
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 528 gcgaagactccactgtctgctacctgaggaagccaaagaagtatggcaaagaagtatgga 469
Query: 168 cacaggtcattgttcaagtgaggatgctgggccaggcaaggggaggggcagcttaacctg 227
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cacaggtcatcgttcaagtgaggatgctgggccaggcaaggggaggggcagcttaacctg 409
Query: 228 gtgctgtgggtgagtgggaggatgtctggngtctctccctactcccagccatccc 282
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 408 gtgctgtgggtgagtgggaggatgtctggggtctctccctactcccagccatccc 354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
