BAC Information

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BAC

Clone NameMSMg01-347O14
Chromosome11 (Build37)
Map Location 46,064,348 - 46,064,565
singlet/doubletsinglet
Overlap geneCyfip2
Upstream geneLOC382510, LOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, C030019I05Rik, LOC100038833
Downstream geneLOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347O14.T7 (MSMg01no347_o14.b1)MSMg01-347O14.TJ (MSMg01no347_o14.g1)
ACCAG460138AG460139
length778809
length of high quality
(start - end)
384 (66 - 449)34 (76 - 109)
definitionCHROMAT_FILE: MSMg01no347_o14.b1 PHD_FILE: MSMg01no347_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:02 2005CHROMAT_FILE: MSMg01no347_o14.g1 PHD_FILE: MSMg01no347_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCAGAGATTTACCGCACTAGAAGGGAGAGTAACCCCGGCTGATCCAT
CTGAGCCGATCCAAACTGGAGAGTTGGCTTTCGCCAGAATATCCAGGAGG
AGAGTCCTAGAAATTCATTTCTCATGAGCAGCTTTTTGGCATTTCTGCCT
CACAAGCTGACTCCACTAGAGTGCCCTGACATGAGGTAAAACACTGCCTC
GAGTGGGAGCCACCTGTGCCACCCTCGTTATTCAGCAGCCATATTTTAAT
GAGGGAAAGAAATGGCTGACATTTTAACAATATGTTTCATTTCATTCAAC
AAACTGAAGCCACTAACATATCAGCATGGCATCAGTGTAAATACTATTAA
AGACATCTCTGCTTTCTCCTAGATCTCCTAAATCTATTATGCACTTGACA
GCGGATGTCCCCTTTGAGGCGTTCAGTAGGTTCCATGGTTGGCGGCCACT
GCTTTGGATTGTGCCATCTCGAATGTCCCTTTCCCATTAAAACCTTTCCA
TGGTTTCCAGTCCATGCATACGCCCCAATTTCCCCACTAGGGTCTGCGTT
CTCACTATACCCGCCCCGTACCCTTATTTGTCATCCCCTGCTTCGCCCCT
ATTTTTTTTTCCCTCCCTCCCCCCTCTTTTTTCCGCCCCTCCCCCCCCTT
ATCTTACCTCATCGTGTCTTTGTCCTCCCTTTCCCCCCCTTTCTCCCCTT
TTCTTCCCCTCTACTTTATTTCCCCCCC
CCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACACATGGAGAAATCATAGCCAAGA
ATGGTGCGGGCAGAGGAGCTGGCCTGCCGCTGGCTTTCCCCCTTTCTTTT
TTTCCTTTTCTCTCCTTTTTCTTCCCCCCCTTTTCCCCCCCCCTTTTCTC
CCCTTTTCCCTCTCTTTCTCTCTCTCTCCCCTCCCTCCTCTCTCCTTTTT
TTTCCTCTTTTCCTTTTTTTTTCCCCCTTTTCCCTTCTTTTTTTCCCCCC
TCCTTCCTCTTCCCTTCCCCTTCTTTTTCCCCCCCTTTTTTCCCCTCCCC
TCCTTTCCCTTTTTTTCCTTTCCTCCTCTCCCCCCTTTTTCTTCCCTCCC
CCCCTTTTCTTTTTTATTTTTCTTTTCCCCCCCCCTCTCTCTTCCCTTCC
CCCTCTCCCCCCTCCCTTTCCCTTCTCTCTCTTCCTTCCCCCCTTTTTTT
CTCCCTCACTTTCACCCTCTTTCTCTCCCTCCCTTTCCCCACCTTTCCCT
TTTTTCTCTCCCCTCTTTCTTCTTTTTCCTCTCCCCCCCCATCTTCTCCT
CCTCCTTTTCTCTTTTCTCCCCTCTTCCTCCCTTTTTCCCCCTCTTTTCT
TTCTCCCCTTCTCTTTTCTACTTCCCCCCTTTCTCTTTTTTCCTCTCCCC
CTTTCTTTCTCCTTTCTCCTCCTTTTTTCCCTTCCTCCTCTCCCCTTCCC
CTCTTACCCTCCCTTTTCCCCCCCCCCTCTTTTTTCCCCCTCCTTCTTTC
TTTCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_o14.b1 MSMg01no347_o14.b1 CHROMAT_FILE:
MSMg01no347_o14.b1 PHD_FILE: MSMg01no347_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:02 2005
         (384 letters)



>mm_chr11_46063982_46064765
          Length = 784

 Score =  377 bits (195), Expect = e-109
 Identities = 213/219 (97%), Gaps = 2/219 (0%)
 Strand = Plus / Minus

                                                                       
Query: 167 tgaggtaaaacactgcctcgagtgggagccacctgtgccaccctc-gttattcagcagcc 225
           ||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||
Sbjct: 584 tgaggtaaaacactgcctcgagtgggagccacctgtggcaccctcag-tattcagcagcc 526

                                                                       
Query: 226 atattttaatgagggaaagaaatggctgacattttaacaatatgtttcatttcattcaac 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 atattttaatgagggaaagaaatggctgacattttaacaatatgtttcatttcattcaac 466

                                                                       
Query: 286 aaactgaagccactaacatatcagcatggcatcagtgtaaatactattaaagacatctct 345
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 465 aaactgaagccactaacatatcagcgtggcatcagtgtaaatactattaaagacatctct 406

                                                  
Query: 346 gctttctcctagatctcctaaatctattatgcacttgac 384
           ||||||||||||||||||||||||||||| |||| ||||
Sbjct: 405 gctttctcctagatctcctaaatctattacgcacatgac 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)