BAC Information

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BAC

Clone NameMSMg01-348J08
Chromosome11 (Build37)
Map Location 58,663,299 - 58,663,679
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311
Downstream gene2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348J08.T7 (MSMg01no348_j08.b1)MSMg01-348J08.TJ (MSMg01no348_j08.g1)
ACCAG460645AG460646
length712741
length of high quality
(start - end)		433 (41 - 473)370 (74 - 443)
definitionCHROMAT_FILE: MSMg01no348_j08.b1 PHD_FILE: MSMg01no348_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:55 2005CHROMAT_FILE: MSMg01no348_j08.g1 PHD_FILE: MSMg01no348_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGAATTTCTCAGCTGGGGAACGAGAGTACCAGTGAGTACAGCTTTACGAG
GTAAGTCTGATCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAA
GTAAAGTGGAAAATAGCTTTACAAGGTACGCCTGGCCTTGAACTTTCTAA
GAAAATTCAAGACAGTCTATCAGAAGTAAAGCGGAAAATAGCTTTATAAG
ATATGTTTGGCCTTGAACTTTCTCTAGTGTTAGAAGCCCTTTTGTTCCTT
TTCACATGTTATCAAGTGGTTAAGGCAGGGCGGATTCTGGATGAAGTTCA
GGACAATCTATCAGAAGTAAAGCGGGGAGAGAGAATAGGAGCAAAAAGAA
AATATGGTACACAAAATAAGTATACAGGCCTTTCCAAGGGTCTTGAACCC
GAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATTACAAGATA
GGAGAAGAAAAAAGAACAGAAAAAAGACCTTTTATAGAAGCCAGTTCTTA
GTAGTTCCTGATTCAGACGAAAAGGTAATTAGGGCCTGGAAAGCCGCTCT
CCCGAGCCAGGTGAAACCCTTTGGGACAAAAATGGCAGAAGGCAGGGCTC
TTTGGCGGCCTAAAAAGGTCTTTATTGGCCCCCCCCCCAAAAGTTGGAAA
AAACAAAAAATA

GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGAACAAGCTATGTACACTGTTCAGA
TCTGTGCTTCTGTTTCCCTTATGCTCTGTGGAGCGTTCTCATGACTCTAT
AATTAAATGGTGACCCACTGCCTTCTGTTTTCTCATCTCAAGGCCTTCAC
CACGCCTGCCTGTTGGCAGTATGGCTCATCAGCACTGGGCATCACCAGTG
AGGAAATTCCAGTCTGGCAGAGATGGGAAGTTCAAATATGAGTAAGAAAG
TATCCACTTGTCTCTATGCTACCATGCTCCCTCCCCATTTACTCATCACA
GGCTGCCACTGGCTCAAGAATGAACAACAAACAAAGCCAGCTGGATTGCA
GCGAATAACGTTAGACCTCAGGGAGCAGAGGAGGGAAAGCTGGGAAGGGA
GTAAAAGAGAAGGGTCTAGAAAAAACAATCCCCCTTTCAGTGCAGTCATC
AAGGACACAGGTAGGCTGGTATTAATACCATATCCTACGAATCACTGGAG
GATGTGATTTCTGTTTTGACTATGGTGCCTTGACTTTGTCCATCACTGTA
TGATTTTGACGCTGATTCCACGTTTTTTCCCTCCTTAAACCTTCCTTATC
TTATTCCCATCCCAATTGGCTGCGACACCATAAATCCCTCCCCAAACAGT
AATGTACCGCCTTTTATTTTAACCCCATCTCCTATTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_j08.g1 MSMg01no348_j08.g1 CHROMAT_FILE:
MSMg01no348_j08.g1 PHD_FILE: MSMg01no348_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:55 2005
         (370 letters)



>mm_chr11_58663297_58664066
          Length = 770

 Score =  605 bits (313), Expect = e-177
 Identities = 359/381 (94%), Gaps = 11/381 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaacaagctatgtacactgttcagatctgtgcttctgtttcccttatgctctgtggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atgaacaagctatgtacactgttcagatctgtgcttctgtttcccttatgctctgtggag 324

                                                                       
Query: 61  cgttctcatgactctataattaaatggtgacccactgccttctgttttctcatctcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 323 cgttctcatgactctataattaaatggtgacccactgccttctgttttctcatctcaagt 264

                                                                       
Query: 121 ccttcaccacgcctgcctgttggcagtatggctcatcagcactgggcatcaccagtgagg 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccttcaccatgcctgcctgttggcagtatggctcatcagcactgggcatcaccagtgagg 204

                                                                       
Query: 181 aaa-----------ttccagtctggcagagatgggaagttcaaatatgagtaagaaagta 229
           |||           ||||||||||| ||||||||||||||| ||| ||||||||||||||
Sbjct: 203 aaacagaccttcccttccagtctggtagagatgggaagttccaatgtgagtaagaaagta 144

                                                                       
Query: 230 tccacttgtctctatgctaccatgctccctccccatttactcatcacaggctgccactgg 289
            ||| ||||||||| || ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 143 cccatttgtctctaggcaaccatgctccctccccattcactcatcacaggctgccactgg 84

                                                                       
Query: 290 ctcaagaatgaacaacaaacaaagccagctggattgcagcgaataacgttagacctcagg 349
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 83  ctcaagaatgaacaacaaacaaagccagctggattgcagcaaataacgttagacctcagg 24

                                
Query: 350 gagcagaggagggaaagctgg 370
           |||||||||||||||||||||
Sbjct: 23  gagcagaggagggaaagctgg 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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