NNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCG
CGGAATTCTTTCTTTTCCCCTTGATGCAGAAACAACATGTCTTCATTTCT
CTTCTATTGCTGCGATAAAGCTCTCTGATGAAAGCGGTTTGAAAGAGAAA
GTTTAGTTTAGGCTTATGGCTTGAGAAGGACAAACAACAGGTGGTGATAG
TACGGTGGCAGAAGCAGCACACTGACTGGTCACACAGCAACCACACAGGA
AGCAGAGAGTGAGCAGGAAGTGAGGTCAGCCAATAATGCCTCAAGGGCAG
CCCTCAGCTACACACATCATCCAGCAATCTCCTCATTCAACACCACCAGT
TGAGGACCAAGTATTTAAGCACATAAACCTATGGGGGGGGGGCATTTCCC
ACTCAAACCATATCAAACCATCTTAGCACTCATTAGAAATGAGCTTGCCT
GACCCAAAGTTCACTTGAATTATTTTTTTAAAGTGAGTGGTTGTCATGGT
TGAATATGCTTGGCGAAAGGAGTGGCACTATTATAGGTGTGGCCTTGTTG
GAAAAGAATGTCCCTGTAGGTGGGGGGCTTTAACCCCGTATTCTAACTGT
CTGAAAGGTAACATTTTTGCCCCCACTTTCCGAAGAAAAATGAAAAATCC
CCCTCCCCCTCTCAACCCTTTCTTCTCGGAAGGTGCCTTTTTCCCCTCCT
TGTAGACTTGGGCTGGACCCTCTTTATTCCCCGGTCCCCTCCCTAATTAA
TGCTGCCCCCTCCTCCTTTTCTCTTGTCACTATGCCCCTATCCCCCA

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGCTGAGGAATACCAAATGGCTG
AGAAGCACCTAAAGAAATGTTCAACATCCTTAGTCATCAGGGAAATACAA
ATCAAAACAATCCTGATATTCCACCTCACACCAGTCAGAATGGCTAAGAC
CAAAATTCAGGTGACAGTAGATGGTGGCAAGGAAGTGGAGAAAGAGGAAC
ACTCCTCCATTGCTGTTGGGATTGCAAGCTGGTACAACCACTCTGGAAAC
CAGTTTGGTGGTTCCTCAGAAAATTGGAAATAGACCCAGCTATACCACTC
CTGGGCATATACCTAGAAGATGCTCCAACATGTAATAAGGACACATGTTC
CACTATGTTCATAGCAGCCTTATTTATAATAGTCAGAAGCTGGAAAGAAA
CCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTTGTACATTTAC
ACAATGGAGTACTACTCAGCCATTAAAAACAATGAATTTATGAAATTCTT
TAGGAAAATGCTGAAACTAGAAAAATCTTCCTGAGGGAAATAACCCAATC
TTAAAAAACACCCCGGAATGGCCTCCCTGGATAGGGGAATTAACCCCCAA
AATCGAAAACCGAAAAACAATTTCCGACCCCCGTGGGTTCCGAAAAAAGA
AAACACGGGGGGAAATTTCCTCCCCCCTAAAAGGGGAAAAAATTTCCTCG
GGAAGTTTTTTAAATTCTCAGGGGG

Query= MSMg01no350_d17.b1 MSMg01no350_d17.b1 CHROMAT_FILE:
MSMg01no350_d17.b1 PHD_FILE: MSMg01no350_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:06 2005
         (473 letters)



>mm_chr11_90996310_90997182
          Length = 873

 Score =  814 bits (421), Expect = 0.0
 Identities = 457/469 (97%), Gaps = 4/469 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattctttcttttc-cc-cttgatgcagaaac-aacatgtcttcatttctcttctatt 61
           ||||||||||| |||| || |||||| ||||||| ||| |||||||||||||||||||||
Sbjct: 203 ggaattctttc-tttcacctcttgatacagaaacaaacgtgtcttcatttctcttctatt 261

                                                                       
Query: 62  gctgcgataaagctctctgatgaaagcggtttgaaagagaaagtttagtttaggcttatg 121
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gctgcgataaagctttctgatgaaagcggtttgaaagagaaagtttagtttaggcttatg 321

                                                                       
Query: 122 gcttgagaaggacaaacaacaggtggtgatagtacggtggcagaagcagcacactgactg 181
           |||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 322 gcttgagaaggacggacaacaggtggtgacagtacggtggcagaagcagcacactgactg 381

                                                                       
Query: 182 gtcacacagcaaccacacaggaagcagagagtgagcaggaagtgaggtcagccaataatg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtcacacagcaaccacacaggaagcagagagtgagcaggaagtgaggtcagccaataatg 441

                                                                       
Query: 242 cctcaagggcagccctcagctacacacatcatccagcaatctcctcattcaacaccacca 301
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 442 cctcaagggcagccctcagctacacacatcatccagcaatctcctcattcaataccacca 501

                                                                       
Query: 302 gttgaggaccaagtatttaagcacataaacctatggggggggggcatttcccactcaaac 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gttgaggaccaagtatttaagcacataaacctatggggggggggcatttcccactcaaac 561

                                                                       
Query: 362 catatcaaaccatcttagcactcattagaaatgagcttgcctgacccaaagttcacttga 421
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cacatcaaaccatcttagcactcattagaaatgagcttgcctgacccaaagttcacttga 621

                                                            
Query: 422 attatttttttaaagtgagtggttgtcatggttgaatatgcttggcgaa 470
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 attatttttttaaagtgagtggttgtcatggttgaatatgcttggcgaa 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)