Query= MSMg01no350_e17.b1 MSMg01no350_e17.b1 CHROMAT_FILE:
MSMg01no350_e17.b1 PHD_FILE: MSMg01no350_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:10 2005
(247 letters)
>mm_chr11_117773609_117774256
Length = 648
Score = 400 bits (207), Expect = e-116
Identities = 237/247 (95%), Gaps = 3/247 (1%)
Strand = Plus / Plus
Query: 1 atacagagaaaccctgt-cgggggggtggggg-agctgtaggtttccatgcccccccttt 58
||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 201 atacagagaaaccctgtgtggggggg-gggggaagctgtaggtttccatgcccccccttt 259
Query: 59 ctgccatctgtaagagcctcgaactgtgggtggtctgtgctgcaggcctggaaccgcccc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgccatctgtaagagcctcgaactgtgggtggtctgtgctgcaggcctggaaccgcccc 319
Query: 119 ccgcccccattctctctcccccttccccgcagacagccacgaactggcagcttctcttct 178
|||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 320 ccgcccccatcctctctccccctcccccgcagacagccgcgaactggcagcttctcttct 379
Query: 179 tgtatcctctactcttgctgctgcattgatccaggtctgctgctcgaaggattgaaaaga 238
|| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 380 tggagcctctactcttgctgctgcattgatccaggtctgctgctcaaaggattgaaaaga 439
Query: 239 caaaggc 245
|||||||
Sbjct: 440 caaaggc 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 648
Length adjustment: 9
Effective length of query: 238
Effective length of database: 639
Effective search space: 152082
Effective search space used: 152082
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no350_e17.g1 MSMg01no350_e17.g1 CHROMAT_FILE:
MSMg01no350_e17.g1 PHD_FILE: MSMg01no350_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:10 2005
(424 letters)
>mm_chr11_117926690_117927513
Length = 824
Score = 797 bits (412), Expect = 0.0
Identities = 421/424 (99%)
Strand = Plus / Minus
Query: 1 agagccacttttagcctcacgccgggtctggtcatcctgaattgactgagtccaccacgg 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agagccacttttagcctcatgccgggtctggtcatcctgaattgactgagtccaccacgg 565
Query: 61 tggagcagatctcctgtgccccaggcccgccgctgagccctcccattgattcctccttcc 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggagcagatctgctgtgccccaggcccgccgctgagccctcccattgattcctccttcc 505
Query: 121 cgaaagttggtctcacagggagcatgtgccagtcaagcactattaagccggagcaagttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgaaagttggtctcacagggagcatgtgccagtcaagcactattaagccggagcaagttg 445
Query: 181 tcagagtgcaggcaaagagacctgaaattgatcagggcacactacacagtcgtatctgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcagagtgcaggcaaagagacctgaaattgatcagggcacactacacagtcgtatctgtc 385
Query: 241 tatgtccgtgctggagctgcctctgcagggcctgggtgatgcccgagcagcccgggaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatgtccgtgctggagctgcctctgcagggcctgggtgatgcccgagcagcccgggaagg 325
Query: 301 ccctagaggatgctccccacagcagatacagcaatcccctcgctctatcagagggaaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccctagaggatgctccccacagcagatacagcaatcccctcgctctatcagagggaaagc 265
Query: 361 ttggaaagctcggtgtctcggatgcggggtgcagatgaggctctgaaggggacaggaagc 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttggaaagcttggtgtctcggatgcggggtgcagatgaggctctgaaggggacaggaagc 205
Query: 421 actg 424
||||
Sbjct: 204 actg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
