Query= MSMg01no351_f12.b1 MSMg01no351_f12.b1 CHROMAT_FILE:
MSMg01no351_f12.b1 PHD_FILE: MSMg01no351_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:34 2005
(539 letters)
>mm_chr11_23087367_23088307
Length = 941
Score = 957 bits (495), Expect = 0.0
Identities = 526/539 (97%), Gaps = 7/539 (1%)
Strand = Plus / Plus
Query: 5 gaattcaaggccagccttagatcctgtgaccttgttgccaagatttttaaaaaatcaaaa 64
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaaggccagccttaggtcctatgaccttgttgccaagatttttaaaaaatcaaaa 265
Query: 65 ccaaataaacaaaggcagtagaaatggctcaaaacttataagtgctttctgttcttctag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccaaataaacaaaggcagtagaaatggctcaaaacttataagtgctttctgttcttctag 325
Query: 125 aggacctgagttcatttcgtagcatccttgttgggtggcttacaatcacctctaagtcca 184
|||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 326 aggacctgggttcatttcgtagcaccc---ttgggtggcttacaatcacctctaagtcca 382
Query: 185 gcctcactcaagggatctgacaccatcttatgaattctgtgaacacctttacacacacat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcctcactcaagggatctgacaccatcttatgaattctgtgaacacctttacacacacat 442
Query: 245 --acacacacacccataatttcaaaataattttaaattaaattaaattgagcactatccc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acacacacacacccataatttcaaaataattttaaattaaattaaattgagcactatccc 502
Query: 303 cctattctttatcttaacaataactccttttaaatgcatttataatcatttagtaaatat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cctattctttatcttaacaataactccttttaaatgcatttataatcatttagtaaatat 562
Query: 363 taattgtcta--ctgagtcaaatagtgataacataaaaatgatcaagagtgatttggatt 420
|||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 563 taattgtctactctgagtcaaatagtgatgacataaaaatgattaagagtgatttggatt 622
Query: 421 tttttttcttaagacagggtctctctatgtagtcctagctgtcctggtgcttgctatgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tttttttcttaagacagggtctctctatgtagtcctagctgtcctggtgcttgctatgta 682
Query: 481 gtttgttagttatggatgcccttgcacagatatcctcctgcctctacctcccaagtgct 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtttgttagttatggatgcccttgcacagatatcctcctgcctctacctcccaagtgct 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 941
Length adjustment: 10
Effective length of query: 529
Effective length of database: 931
Effective search space: 492499
Effective search space used: 492499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_f12.g1 MSMg01no351_f12.g1 CHROMAT_FILE:
MSMg01no351_f12.g1 PHD_FILE: MSMg01no351_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:34 2005
(478 letters)
>mm_chr11_23255546_23256423
Length = 878
Score = 832 bits (430), Expect = 0.0
Identities = 463/480 (96%), Gaps = 12/480 (2%)
Strand = Plus / Minus
Query: 1 attaattattttccacctaaataatgacacatcacagtcttaaaaagagtattaactggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 attaattattttccacctaaataatgacacatcacagtcttaaaaagagtattaactggc 636
Query: 61 tagagagatggctccctgattaatagcacatactcttcttgaggagtccctaggttcagc 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 635 tagagagatggctccctgattaatagcacatactcttcttgaggagtgcctaggttcagc 576
Query: 121 acccagcaccaacacagaagctcacaactgcctataactctggttccaggagatctgaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 acccagcaccaacacagaagctcacaactgcctataactctggttccaggagatctgaca 516
Query: 181 atattccatataaattaaaaataaatctcttgaaaaatatacaatgacagaatagacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atattccatataaattaaaaataaatctcttgaaaaatatacaatgacagaatagacaga 456
Query: 241 cagagacagacaagagagacaggctgactaaacagattcctggttttaagctgttagcat 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 455 cagagacagacaagagagacaggctgactaaacagattcttggttttaagctgttagcat 396
Query: 301 atgcctataatcccagcatacatacacacacacacacacacacagagccagagagagaga 360
|||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct: 395 atgcctataatcccagcatacatacacacacacacacacacaca----c------acaca 346
Query: 361 gagag--agagagagagagagagcaagcaatgtgtacatatgtccgacagcactaaggat 418
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cagagccagagagagagagagagcaagcaatgtgtacatatgtccgacagcactaaggat 286
Query: 419 aagaaaagctgtctcagacactaaggtgcatggaaagtgccaaatccatttggtattcac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aagaaaagctgtctcagacactaaggtgcatggaaagtgccaaatccatttggtattcac 226
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
