CCTCTTATTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGA
GGATCCGCGGAATTCCAAGCTGTTTACATGACTCAGTGAATAAAGGGGCT
GTACTCAGATCCCCAACACCCATAAAAAGAGCCCGGCAAAGCAGTCCAGC
CTTTTACCTCAGCACCGAGGTGACAGAGACAGAAAGGTCCCTGAGCTCAG
TGAGCTACAACCTAGCTGAACTGATGAGCTGCAAATTCAAAGAGAAACCC
TGTCCAGAAAAACAGGGCAGAGCAATCAAGGAAAGCTACCATGTTGACCT
CGGGCTTCAATATACACTGGTGTATGTTGATACTAACACATAAATACACA
CACACACACACACACACACACACACACACACACACACCACATACCATCAC
AAGTTGTTAGAGAAAGGCAGTAAGTGACTGCTTTGTCCTCAGGAGGACGA
CTGTTATCAAAGGCACATGATAAGTGCTAGCCAGGCTCTCAGAAACCTTT
CTACTGGCGATGCCCAGAGTAATGCCTTGCAAACAGCTTCTCTAGGGCTG
AAACCGAATTACTCTATGATGCATAAATGCCACAAACACAAATTTTACCA
TGTGACCCAGAAATGTCACCTTTGGTTACATACACAATGAAAAAGGTTTT
CCATGCACTCATTTTTTAAAATGATTTGCTTTTTGGGTACATGTATGTCC
GTGTGTCTGGCTGAGTGCATCCGATGN

CCCCCACTNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTGCCTCAGAC
CCAGAGAGATGGCTTAGCTGGAAATGGTGCTTGTCACTAAGCCTAATGAC
CTGAGTTTGCTCCAAGACTTACATGGTAGAGATTGTCCTCTGACAGCCAT
ATGTACAGCAGGGCACACACATGCCCACATAGGTACACACTGAATGAATA
GGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTNNNNNN
NNNNNNNNNTNNNNTNNNNTNNTTTTTTTTTTTTNTTTTTTTTTTTTTTT
TTTTTTNTTTTNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTN
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTT
TTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
NTTTTTTTTTNTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTNTCTTTTTTTCCTTTTCTTTTTTTTTTN

Query= MSMg01no351_l14.b1 MSMg01no351_l14.b1 CHROMAT_FILE:
MSMg01no351_l14.b1 PHD_FILE: MSMg01no351_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:02 2005
         (559 letters)



>mm_chr11_63645640_63646598
          Length = 959

 Score =  853 bits (441), Expect = 0.0
 Identities = 510/543 (93%), Gaps = 17/543 (3%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattccaagctgtttacatgactcagtgaataaaggggctgtactcagatccccaacac 76
           |||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattccaagctgggaagatgactcagtgaataaaggggctgtactcagatccccaacac 276

                                                                       
Query: 77  ccataaaaagagcccggcaaagcagtccagccttttacctcagcaccgaggtgacagaga 136
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 277 ccataaaaagagcacggcaaagcagtccagtcttttacctcagcaccgaggtgacagaga 336

                                                                       
Query: 137 cagaaaggtccctgagctcagtgagctacaacctagctgaactgatgagctgcaaattca 196
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cagaaaggtccctaagctcagtgagctacaacctagctgaactgatgagctgcaaattca 396

                                                                       
Query: 197 aagagaaaccctgtccagaaaaacagggcagagcaatcaaggaaagctaccatgttgacc 256
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 397 aagagaaaccctgtccagaaaaacagggcggagcaatcaaggaaagctaccatgttgacc 456

                                                                       
Query: 257 tcgggcttcaatatacactggtgtatgttgatactaacacataaatacacacacacacac 316
           | ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 457 ttgggcttcaaaatacactggtgtatgttgatacaaacacataaatacacacacacacac 516

                                                                       
Query: 317 acacacacacacacacacacacacacaccacataccatcacaagttgttagagaaaggca 376
           ||| ||||||||||                ||||||||||||||||||||||||||||||
Sbjct: 517 acatacacacacac----------------cataccatcacaagttgttagagaaaggca 560

                                                                       
Query: 377 gtaagtgactgctttgtcctcaggaggacgactgttatcaaaggcacatgataagtgcta 436
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 gtaagtgactgctttgtcctcaggagaacgactgttatcaaaggcacatgataagtgcta 620

                                                                       
Query: 437 gccaggctctcagaaacctttctactggcgatgcccagagtaatgccttgcaaacagctt 496
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 621 gccaggctctcagaaacctttctactggctaggcccagagtaatgccttgcaaacagctt 680

                                                                       
Query: 497 ctctagggctgaaaccgaattactctatgatgcataaatgccacaaacacaaattttacc 556
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 681 ctctagggctgaaaccgaattactctatgatgcatagatgccacaaacacaaattt-acc 739

              
Query: 557 atg 559
           |||
Sbjct: 740 atg 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)