Query= MSMg01no353_b17.b1 MSMg01no353_b17.b1 CHROMAT_FILE:
MSMg01no353_b17.b1 PHD_FILE: MSMg01no353_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:52 2005
(461 letters)
>mm_chr11_52330966_52331826
Length = 861
Score = 868 bits (449), Expect = 0.0
Identities = 458/461 (99%)
Strand = Plus / Minus
Query: 1 atcccaggcattgaagacgcgtgtaagaagctaaagccatggtgtcacagacgcagaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 atcccaggcattgaagacgcgtgtaagaagctaaagccatggtgtcacagacgcagaagg 428
Query: 61 actggaaatacactctggtggcctggagggtcaggagacataaatggatatagatccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 427 actggaaatacactctggtggcctggagggtcaggagacataaatggatatagttccatg 368
Query: 121 tgcacaaatgtggggctgccataccttgtgggtgggctttatggagcctgggcccctgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgcacaaatgtggggctgccataccttgtgggtgggctttatggagcctgggcccctgac 308
Query: 181 acaaagctgagtttagagccagcccacccatgggagggccaatctctggagaaaacctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 acaaagctgagtttagagccagcccacccatgggagggccaatctctggagaaaacctta 248
Query: 241 ccaagggaacttttactccctgcaaacaggaaacaaaactaacccaaggggctggagaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ccaagggaacttttactccctgcaaacaggaaacaaaactaacccaaggggctggagaga 188
Query: 301 cagctcaacagttaagagcactggctgttctcccagaggacccgggttttaatttcaatc 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 187 cagctcaacagttaagagcactggctgctctcccagaggacccgggttttaatttcaatc 128
Query: 361 acatacatgatggatggctcagaaccatggaactccagttccagggaatccagtgccctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 acatacatgatggatggctcagaaccatggaactccagttccagggaatccagtgccctc 68
Query: 421 ttctggcgtccatgggtactgcatgcacacaaagcatagac 461
|||||||||||||||||||||||||||||||| ||||||||
Sbjct: 67 ttctggcgtccatgggtactgcatgcacacaaggcatagac 27
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_b17.g1 MSMg01no353_b17.g1 CHROMAT_FILE:
MSMg01no353_b17.g1 PHD_FILE: MSMg01no353_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:53 2005
(389 letters)
>mm_chr11_52172599_52173391
Length = 793
Score = 611 bits (316), Expect = e-179
Identities = 386/440 (87%), Gaps = 51/440 (11%)
Strand = Plus / Plus
Query: 1 tttaatctgtcatctgtgccttctctaccgcaaatagctgtct----ccccagcaaaagt 56
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tttaatctgtcatctgtgccttctctaccgcaaatagctgtctgtctccccagcaaaagt 260
Query: 57 gacacaagccactcgctgagttttaggtaagtgccttaccagtcctctgcatctccattc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacacaagccactcgctgagttttaggtaagtgccttaccagtcctctgcatctccattc 320
Query: 117 attttaaactaaaaccaagactcccagggcgctgaacggaggtggcgcacaccgccttta 176
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttaaattaaaaccaagactcccagggcgctgaacggaggtggcgcacaccgccttta 380
Query: 177 atcccagcacttgggaggcag--------ggatttctgagttcgaggccagcctggtcta 228
||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 381 atcccagcacttgggaggcagaggcaggcggatttctgagttcgaggccggcctggtcta 440
Query: 229 cagtgttagttccaggacagtcaaggctatacagagaaaccctgtctcgg-aaaaaa--- 284
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 441 cagtgttagttccaggacagccaaggctatacagagaaaccctgtctcgggaaaaaacaa 500
Query: 285 --------------------------------aaaaacccaaaaaataaaacaaaacaaa 312
||||||||||||||||||||||||||||
Sbjct: 501 acaaacaaacaaacaaaaaacaaaaacaaaaaaaaaacccaaaaaataaaacaaaacaaa 560
Query: 313 aaaaaa---caagaaagactctcagggcgaagttccgagaagccagactttctgcccacc 369
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaaaaccaagaaagactctcagggcgaagttccgagaagccagactttctgcccacc 620
Query: 370 cacgacacacagccctgggc 389
||||||||||||||||||||
Sbjct: 621 cacgacacacagccctgggc 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 793
Length adjustment: 9
Effective length of query: 380
Effective length of database: 784
Effective search space: 297920
Effective search space used: 297920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
