BAC Information

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BAC

Clone NameMSMg01-354L06
Chromosome11 (Build37)
Map Location 44,330,489 - 44,414,102
singlet/doubletdoublet
Overlap gene3732413I11Rik
Upstream geneCcnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b, Il12b, Ublcp1
Downstream geneEbf1, LOC382510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354L06.T7 (MSMg01no354_l06.b1)MSMg01-354L06.TJ (MSMg01no354_l06.g1)
ACCAG465267AG465268
length713745
length of high quality
(start - end)		615 (57 - 671)468 (85 - 552)
definitionCHROMAT_FILE: MSMg01no354_l06.b1 PHD_FILE: MSMg01no354_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:56 2005CHROMAT_FILE: MSMg01no354_l06.g1 PHD_FILE: MSMg01no354_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,330,489 - 44,331,099)(44,413,803 - 44,414,102)
sequence
CCCCCCAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTTATTCTGTGTTTCTGGCCACATATTTTCCTGC
CTTCGCCAGTAGTGAAACTTTGAGAGTAAAAGCCAAGGAAAGCTGTTGCT
AGCATAGGCAGCTTCCTATTGCAACCATCAGCCAGTGCGGATTTTTACCT
AGGAGGCTACATACAGAAGAGACTCATGAAACCACTGCTCTGTGATGTGA
CAGGTGTAATGGCTATTCCAAGGTGGCCTAAGGGATCCAAACAAAAGTGG
TTATAAGGAGTTATGAACAGAATCCCCAGAAACATTTAAACCCTGCTATG
AAGCTAGTAGGTGACAGTTACCGATAATCATCAATTTGACAAAATTAGTC
ACATGGGACCATGGCTCCTGAGGACATTCTCTTGATTAGTGTGATGCCAT
TCCTTGGATAGGGCATCCTGCACTGCTTACGAGTGAGGAACATGAGGCAC
TGAGCAGTGACATGCATGCATTCACATCGCTCTCTGCTTCTAGACTCTGG
GTAAAGTGACCAGCTGTTTCAAGTTCCTGATGCCTTAACCTGCCCCACGA
GGGACTGTGCATTAAACAGTGAGCTGAAAGACACCCATTCTCCATAAATT
CTGTCCAAGTTTTATCACAGTCACAGAATATGTGAGGGAAGATATGCTAC
TGTGAACTTTAGG

NNNNNCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTATGTCTCTGAA
AGCTCCTATTGCCTAGGATGAACACTTGCTTGAAACAACTTATTCCTAGT
AGACATGTTGACATATTGTTAAAACTGCACATATGCTAAAGAAATGGCAC
AGTGGTTAAGAAACTGGTTGCTCTCCCAGAGGACCCTGGTTCTATTCCCA
ACACTCACCCAACTCACATCTGAAAACCAAGGGATACAGCATCTTCTTCT
GGCCTCTGCCAGCATTGCATGCACTTGGAATATGGACATATATACAGGCA
GAACACCCATATACATAAAATAAAATAAAGGTTAATTTTTAAAAATAAAA
TAACATCTTAAAAATGAAAGACTGAATAAATTCAGGTGTGTGTGGTATGT
ATACTATTTGGTATGAGTGTGTGCTTGTGTGTATAGTATATGGCATGTAT
GTGTTTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATAT
ATATAAANATATAAANATATATATTTATAAATTTATATATATATATTTTA
TATANAATAATATATTATATTTTAAAAATTNNAATATANATTATTNNNNT
NTTTTTTTATTTTTTTTTTTTTTTTTTAATATANATANAAAATATTTTTT
ANTTTTATTTTNNTTTTTATTTAAAAATTATTATATTTATTTNAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_l06.b1 MSMg01no354_l06.b1 CHROMAT_FILE:
MSMg01no354_l06.b1 PHD_FILE: MSMg01no354_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:56 2005
         (615 letters)



>mm_chr11_44330285_44331299
          Length = 1015

 Score = 1081 bits (559), Expect = 0.0
 Identities = 598/611 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttattctgtgtttctggccacatattttcctgccttcgccagtagtgaaactt 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 205 gaattctttattctgtgtttctggccacatattttcctgccttagccagcagtgaaactt 264

                                                                       
Query: 65  tgagagtaaaagccaaggaaagctgttgctagcataggcagcttcctattgcaaccatca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgagagtaaaagccaaggaaagctgttgctagcataggcagcttcctattgcaaccatca 324

                                                                       
Query: 125 gccagtgcggatttttacctaggaggctacatacagaagagactcatgaaaccactgctc 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gccagtgaggatttttacctaggaggctacatacagaagagactcatgaaaccactgctc 384

                                                                       
Query: 185 tgtgatgtgacaggtgtaatggctattccaaggtggcctaagggatccaaacaaaagtgg 244
           ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtgatgtgacaggtttaatggttattccaaggtggcctaagggatccaaacaaaagtgg 444

                                                                       
Query: 245 ttataaggagttatgaacagaatccccagaaacatttaaaccctgctatgaagctagtag 304
            ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctataacgagttatgaacagaacccccagaaacatttaaaccctgctatgaagctagtag 504

                                                                       
Query: 305 gtgacagttaccgataatcatcaatttgacaaaattagtcacatgggaccatggctcctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgacagttaccgataatcatcaatttgacaaaattagtcacatgggaccatggctcctg 564

                                                                       
Query: 365 aggacattctcttgattagtgtgatgccattccttggatagggcatcctgcactgcttac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggacattctcttgattagtgtgatgccattccttggatagggcatcctgcactgcttac 624

                                                                       
Query: 425 gagtgaggaacatgaggcactgagcagtgacatgcatgcattcacatcgctctctgcttc 484
           ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 625 gagtgaggaacatgaggcagtgagcagtgacatgcatgcattcacatcactctctgcttc 684

                                                                       
Query: 485 tagactctgggtaaagtgaccagctgtttcaagttcctgatgccttaacctgccccacga 544
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagactctgggtgaagtgaccagctgtttcaagttcctgatgccttaacctgccccacga 744

                                                                       
Query: 545 gggactgtgcattaaacagtgagctgaaagacacccattctccataaattctgtccaagt 604
           |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 745 gggactgtgcgttaaacagtgagctgaaacacacccattctccataaattctgtccaagt 804

                      
Query: 605 tttatcacagt 615
           |||||||||||
Sbjct: 805 tttatcacagt 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_l06.g1 MSMg01no354_l06.g1 CHROMAT_FILE:
MSMg01no354_l06.g1 PHD_FILE: MSMg01no354_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:56 2005
         (468 letters)



>mm_chr11_44413803_44414670
          Length = 868

 Score =  580 bits (300), Expect = e-170
 Identities = 300/300 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtatgtctctgaaagctcctattgcctaggatgaacacttgcttgaaacaacttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tttgtatgtctctgaaagctcctattgcctaggatgaacacttgcttgaaacaacttatt 241

                                                                       
Query: 61  cctagtagacatgttgacatattgttaaaactgcacatatgctaaagaaatggcacagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cctagtagacatgttgacatattgttaaaactgcacatatgctaaagaaatggcacagtg 181

                                                                       
Query: 121 gttaagaaactggttgctctcccagaggaccctggttctattcccaacactcacccaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gttaagaaactggttgctctcccagaggaccctggttctattcccaacactcacccaact 121

                                                                       
Query: 181 cacatctgaaaaccaagggatacagcatcttcttctggcctctgccagcattgcatgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 cacatctgaaaaccaagggatacagcatcttcttctggcctctgccagcattgcatgcac 61

                                                                       
Query: 241 ttggaatatggacatatatacaggcagaacacccatatacataaaataaaataaaggtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  ttggaatatggacatatatacaggcagaacacccatatacataaaataaaataaaggtta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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