BAC Information

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BAC

Clone NameMSMg01-355B03
Chromosome11 (Build37)
Map Location 121,587,639 - 121,588,016
singlet/doubletsinglet
Overlap genenone
Upstream geneDcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl
Downstream genePtchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355B03.T7 (MSMg01no355_b03.b1)MSMg01-355B03.TJ (MSMg01no355_b03.g1)
ACCAG465546AG465547
length763797
length of high quality
(start - end)		554 (46 - 599)376 (76 - 451)
definitionCHROMAT_FILE: MSMg01no355_b03.b1 PHD_FILE: MSMg01no355_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:25 2005CHROMAT_FILE: MSMg01no355_b03.g1 PHD_FILE: MSMg01no355_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAAACAGGTATTCCTTTCTTCACTATGAGAATCAGTTATGGGGC
TGGAGAGATGGCTTAGTGGTTAAGAGCACAGACTGCATTGAAGAGGACCA
AGGCCTGGTTCCCAGTACCCACATTGGAAAATTCACAATTGCTTCTAACT
CCAGCTCCAGGGGACCAGACACTTCTAGTCTCTGAGGGTGCCTCCACACT
CCTACACACACACTAAAAATAAATAAATAATTAAAAAAGAAAAGCAGCTG
TCAGCTTGCCTTACTATTGTATTTTATATATTTTTGTTTTTAAAAACAGA
TAAAATGTGGGTTGAATATTAGCAAAGTTCAGAGTTAGCAAGACCAAGTG
AAGAGGGTGCCATTGTAATCAACCCAAAATGCTAATTGCTAGAGTTGTCT
TAGTCTCAATCTCTCAATATTCTTAATGATGTGAAAAAACAACCCAGTTT
ACCAGTGCACACTTACTGTTGCCACCTATCCTGCATAGGATCTCTAATAA
CACTAACACCAATGACAGAAATAGTAACTAATGTTTGTTTATTTAGTGTC
TGTTAGGTGACAGGGCCTGCACAGTTTTACATATTTCACCCTCAATTTTG
CAGTAATCCTGAAAGGTATGTGCTATTTACTCAGTTTTACAGATGAACGC
TCTATGACGCTGTCTAGCACTCCCTTGGCCTGGGACTCAGAGCTGGAATC
TGAGTCTTTCATN

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCATGCATGCATCAGTAGTTTGAG
GCTGGGGCTTTGGCGGTTGCCCTGGTTCTCCTCTCATGAACCACCTTGAC
AGGTTGCAGAACCCTTCTCTGCTTTTTTCCTTCTCAACCCCAGAATCTGA
ATGCCTGAGGAGAAGCTAAATTCAGGAAACTGAAAGATGAGTCTCAGGTC
AAGCCCTCTGTGGGACAGGTAAGTCACACAGGGTGGTCCATTCCTTTCTC
TCTCTTAGCTCTCCCACACCCTGTATCCTCTTTCCTGATGTCCCTTTTCT
GATGGGGGAATGTAACCTCATGGAACAAATTGAATTGAGGTTAAAGAGCA
GAGTGTTGTGAGAACTGTCATTGTGCACACTCTTGTGATCTCTGTTCAAA
TGCTCTCAGCCTCACCATCCCAGGGTTCCCCTGTGCCCTACTCTTAAGTT
TGGATTTATTTTTACGCTTGCTTCTTTTATTTGCAAGCGCCCTCGCTGCA
TGTCTGTAGCCTCTTTTGACACATTACCGCTGGCCTGTTTTTTTCTCTTT
TTTTTGTCCAACCTTTTTATTTTCTGCTTTTCCACCTCCCTGTTCTGGGT
CCTCTATCTATAAATTTTAATTTTCCCCATTCCTATTACTTCTTTATCTT
CCCTTTTTTATCTTTGTCTCTAATTAAAAACCCATCCTGCTATAATTTTC
TTCCTCTTCACCTATCCTTCATCATTTCCCTTATCTATTAGCTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_b03.g1 MSMg01no355_b03.g1 CHROMAT_FILE:
MSMg01no355_b03.g1 PHD_FILE: MSMg01no355_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:25 2005
         (376 letters)



>mm_chr11_121587439_121588216
          Length = 778

 Score =  659 bits (341), Expect = 0.0
 Identities = 369/379 (97%), Gaps = 4/379 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatgcatgcatcagtagtttgaggctggggctttggcggttgccctggttctcctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatgcatgcatcagtagtttgaggctggggctttggcggttgccctggttctcctctc 260

                                                                       
Query: 61  atgaaccaccttgacaggttgcagaaccct-tctctgcttttttccttctcaaccccaga 119
           | |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 261 acgaaccaccttgacaggttgcagaaccctgt-tctgcttttttccttctcaaccccaga 319

                                                                       
Query: 120 atctgaatgcctgaggagaagctaaattcaggaaactgaaagatgagtctcaggtcaagc 179
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 320 atctgaatgcctgaggagaagctagattcaggagactgaaagatgagtctcaggtcaagc 379

                                                                       
Query: 180 cctctgtgggacaggtaagtcacacagggtggtccattcctttctctctcttagctctcc 239
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cctctgtgggacatgtgagtcacacagggtggtccattcctttctctctcttagctctcc 439

                                                                       
Query: 240 cacaccctgtatcctctttcctgatgtcccttttctgatgggggaatgtaacctcatgga 299
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 440 cacaccctgtatcctctttcctgatgtcccttttctgatggggtaatgtaacctcatgga 499

                                                                       
Query: 300 acaaattgaattgaggttaaagag--cagagtgttgtgagaactgtcattgtgcacactc 357
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 500 acaaattgaattgaggttaaagagagcagagtgttgtgagaactgtcattgtgcacactc 559

                              
Query: 358 ttgtgatctctgttcaaat 376
           |||||||||||||||||||
Sbjct: 560 ttgtgatctctgttcaaat 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 778
Length adjustment: 9
Effective length of query: 367
Effective length of database: 769
Effective search space:   282223
Effective search space used:   282223
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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