Query= MSMg01no355_n11.b1 MSMg01no355_n11.b1 CHROMAT_FILE:
MSMg01no355_n11.b1 PHD_FILE: MSMg01no355_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:24 2005
(261 letters)
>mm_chr11_23870266_23870926
Length = 661
Score = 482 bits (249), Expect = e-140
Identities = 258/261 (98%)
Strand = Plus / Plus
Query: 1 ccaagcacgtgagacaaggatgctctgagcctgaaacagtaacgaggacaagtgttctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaagcacgtgagacaaggatgctctgagcctgaaacagtaacgaggacaagtgttctaa 260
Query: 61 tgaacttgggcaatcatggcctcagatgcatctcgtgtgttaaaatgctcagccatgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaacttgggcaatcatggcctcagatgcatctcgtgtgttaaaatgctcagccatgagc 320
Query: 121 ttcagaaccttcatgaagcaaagcaggttaaaaggccttgtgaataaagagatctttggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagaaccttcatgaagcaaagcaggttaaaaggccttgtgaataaagagatctttggg 380
Query: 181 gacagaatcttggtgtccattagaaaaggaatcacacccaccgatctcatggaaatggtt 240
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct: 381 gacagaatcttggtgtccattagaaaaggaatcacacccaccgatcccacggaaatggct 440
Query: 241 aagctttgcctaaggatgcag 261
|||||||||||||||||||||
Sbjct: 441 aagctttgcctaaggatgcag 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space: 164304
Effective search space used: 164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no355_n11.g1 MSMg01no355_n11.g1 CHROMAT_FILE:
MSMg01no355_n11.g1 PHD_FILE: MSMg01no355_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:24 2005
(546 letters)
>mm_chr11_24038220_24039166
Length = 947
Score = 1035 bits (535), Expect = 0.0
Identities = 544/547 (99%), Gaps = 1/547 (0%)
Strand = Plus / Minus
Query: 1 caagttaaagttcccagacccatgaaaagcaagcctcaactggtgcccttaaactggcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 caagttaaagttcccagacccatgaaaagcaagcctcaactggtgcccttaaactggcct 688
Query: 61 cactctctaacaaccgaaccagcctttaacaagggtgtccacgctcatttcttactccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cactctctaacaaccgaaccagcctttaacaagggtgtccacgctcatttcttactccct 628
Query: 121 tcttgtgggcagtggaatacaagaagcacgagactgattttaaccagtgatgtcatcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcttgtgggcagtggaatacaagaagcacgagactgattttaaccagtgatgtcatcagc 568
Query: 181 cagtcgaactaaggaagcacagaaaggttaagacaagaaagtcacgaacccttgatggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cagtcgaactaaggaagcacagaaaggttaagacaagaaagtcacgaacccttgatggaa 508
Query: 241 gagaggatcaggaagttggttgacatatgtgtagaccaacgtggtcaagtgacaccaaca 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gagaggagcaggaagttggttgacatatgtgtagaccaacgtggtcaagtgacaccaaca 448
Query: 301 aaaacaaagctactctcaaattgctgcctctgaaggtcttctcactcagtttcccaatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaaacaaagctactctcaaattgctgcctctgaaggtcttctcactcagtttcccaatct 388
Query: 361 ccagaatgcagtctccctaagtaagcctggagtatcactaggtagacctgactaactaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccagaatgcagtctccctaagtaagcctggagtatcactaggtagacctgactaactaca 328
Query: 421 taacgaggtatgcacagatcaaaacagaaatacctagcattcattccattatgaagatgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 taacgaggtatgcacagatcaaaacagaaatacctagcattcattccattatgaagatgc 268
Query: 481 actaaactattctaatataatttacccattgctgtttctc-ttttttttttcttaagaag 539
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 267 actaaactattctaaaataatttacccattgctgtttctctttttttttttcttaagaag 208
Query: 540 gagtgaa 546
|||||||
Sbjct: 207 gagtgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space: 502232
Effective search space used: 502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
