BAC Information

Click to search

BAC

Clone NameMSMg01-356C18
Chromosome11 (Build37)
Map Location 61,865,920 - 62,041,125
singlet/doubletdoublet
Overlap geneSpecc1
Upstream geneKcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558
Downstream geneAdora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356C18.T7 (MSMg01no356_c18.b1)MSMg01-356C18.TJ (MSMg01no356_c18.g1)
ACCAG466380AG466381
length780810
length of high quality
(start - end)		560 (35 - 594)417 (67 - 483)
definitionCHROMAT_FILE: MSMg01no356_c18.b1 PHD_FILE: MSMg01no356_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:49 2005CHROMAT_FILE: MSMg01no356_c18.g1 PHD_FILE: MSMg01no356_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,040,622 - 62,041,125)(61,865,920 - 61,866,336)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCTGT
TTCCTAGTAAGTCACAGCAAAGGCATCACAAAGCATCAACTGAGGGCCAA
TTACCACCTCCAGTACAAGCTTCCTTCACCACAGGTACCTAACGATGGTG
GAATATGGCAGTGGCCGGAAGTGCAGACTTTGGTACCAGCCGGCTTTGGT
TTAACCTTCTGCTTTGCTTCCTCCAAGCTAAGTTACTGTAAACAAATTAT
TTAGCTTTTGTACGCCTCCGTTCGCTTATTTGTCAAATGGTCTAGTATTA
ACCATGCTCACCGGTGCCCTGAGCCATTCAGATCAGTCCCTTGTTCACTC
CCAAGTGTTGACTTTTTAGCTAGTTATACAGGCTCCAGTCCCATGCAGGA
AAGTTGTGTAGGAAGCTAAATTCCATCCCAGAAAACACATCATTACTACG
GAGGAATGCCTTTGGAGGAAGTCAGTTCTAGGATGCATGAACATGGCTTA
CTCTTAAGTAGGGACCACACTTATCTTACTCTAGCTGCTTGGTCAGGNAT
GGGCACATGGCCTAGGAAATGGAAACCACCAGTTGGCAGCTGAGCTGGGG
AAAGCTCTCCTAGGAAACAGTTGGGGCACAGGAAAGATGGAGAACCCTGA
TAGTGGAGTAACCCGGCTCCTCTGTTTGGGGGAGGTTAACTCTATGGCTC
AATTTTATTGGGACTGGATAGAAGGCTTTATTTTTTGTGTACCCCAAAAA
AATTTTGGAAAAAAAGGGCCCTTGCTTTTN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAACACCTTGTTCTGAAGGCAAACAGGAGAAGATT
GGCTTCTAAGCAGCTAGGAAGATGATCTCTCAAAGCCCACCCCTACAGTG
ACACACTTCCTCCAACAAGGCCCCCTCCTAATAGTGCCATTTTCTGGGCC
AGGCATATTCAAACCACCACAATAGTCCTCCATGAAGTGTAGTCAAAAGC
AAAGGAATCCTGCATGACTCTCGGCAGGTGCTTCATATAGAGGCTTCACC
CTGTAGCTCAGTTTCTTTCTGCATGGTGGACATTTTGTAAAAGCATCCTT
TAATGTCCTGAAGTGAAATTGATGAGTCTATAAATGTGGCTGAAAAAAAA
ATTAATGCCTTACCTGAACTATAGAAGAGAAAGAATAGGANACCAGATCC
TAATGAAGTAGCATTGTGGATGAGCAGCAGGCCCCTGGCTCCCTCAGAAG
GAGGGGGAATGCTACACACTGTGTAAACCCTGTCCGAAGAAACTGCTGCT
CTTGAAACTGAAAGCACCAGCCAGCAAGCCGCACTAAAAAATGGTGTGGA
AGGGCTTTCTGAATACCAAAAAAAGGGGGGAAATTTCCTTTAAGGGGAGG
AAATTCCCGGGTCCACTTTAAGGGGATTAGGGAAAACACGTTTGGAAAAT
GTTCCCGGGGCCCTTTTTAAAACCATAAAATAACCCCCCCTCAAAAAAAT
TCCTCTCCCCCTGCATATACAAGATTAAGGGGGGGACATTATCTCTTTTC
CCTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_c18.b1 MSMg01no356_c18.b1 CHROMAT_FILE:
MSMg01no356_c18.b1 PHD_FILE: MSMg01no356_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:49 2005
         (560 letters)



>mm_chr11_62040166_62041125
          Length = 960

 Score =  891 bits (461), Expect = 0.0
 Identities = 493/504 (97%)
 Strand = Plus / Minus

                                                                       
Query: 57  tgagggccaattaccacctccagtacaagcttccttcaccacaggtacctaacgatggtg 116
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 960 tgagggccaattaccacctccagtacaggcttccttcaccacaggtacctaacaatggtg 901

                                                                       
Query: 117 gaatatggcagtggccggaagtgcagactttggtaccagccggctttggtttaaccttct 176
           |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct: 900 gaatatggcagtggccggaagtgcaggctttggtaccagctggcttcggtttaaccttct 841

                                                                       
Query: 177 gctttgcttcctccaagctaagttactgtaaacaaattatttagcttttgtacgcctccg 236
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 840 gctttgcttcctccaagctaaggtactgtaaacaaattatttagcttttgtacgcctccg 781

                                                                       
Query: 237 ttcgcttatttgtcaaatggtctagtattaaccatgctcaccggtgccctgagccattca 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ttcgcttatttgtcaaatggtctagtattaaccatgctcaccggtgccctgagccattca 721

                                                                       
Query: 297 gatcagtcccttgttcactcccaagtgttgactttttagctagttatacaggctccagtc 356
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gatcagtcccttgctcactcccaagtgttgactttttagctagttatacaggctccagtc 661

                                                                       
Query: 357 ccatgcaggaaagttgtgtaggaagctaaattccatcccagaaaacacatcattactacg 416
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ccatggaggaaagttgtttaggaagctaaattccatcccagaaaacacatcattactacg 601

                                                                       
Query: 417 gaggaatgcctttggaggaagtcagttctaggatgcatgaacatggcttactcttaagta 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gaggaatgcctttggaggaagtcagttctaggatgcatgaacatggcttactcttaagta 541

                                                                       
Query: 477 gggaccacacttatcttactctagctgcttggtcaggnatgggcacatggcctaggaaat 536
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 540 gggaccacacttatcttactctagctgcttggtcagggatgggcacatggcctaggaaat 481

                                   
Query: 537 ggaaaccaccagttggcagctgag 560
           |||||||||||| |||||||||||
Sbjct: 480 ggaaaccaccagctggcagctgag 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no356_c18.g1 MSMg01no356_c18.g1 CHROMAT_FILE:
MSMg01no356_c18.g1 PHD_FILE: MSMg01no356_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:49 2005
         (417 letters)



>mm_chr11_61865720_61866536
          Length = 817

 Score =  777 bits (402), Expect = 0.0
 Identities = 413/417 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaccttgttctgaaggcaaacaggagaagattggcttctaagcagctaggaagatgat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 aacaccttgttctgaaggcaaacaggagaagattggcttctaagcagctaggaagatggt 260

                                                                       
Query: 61  ctctcaaagcccacccctacagtgacacacttcctccaacaaggccccctcctaatagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctcaaagcccacccctacagtgacacacttcctccaacaaggccccctcctaatagtg 320

                                                                       
Query: 121 ccattttctgggccaggcatattcaaaccaccacaatagtcctccatgaagtgtagtcaa 180
           ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ccattttctgggccaagcatattcaaaccatcacaatagtcctccatgaagtgtagtcaa 380

                                                                       
Query: 181 aagcaaaggaatcctgcatgactctcggcaggtgcttcatatagaggcttcaccctgtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcaaaggaatcctgcatgactctcggcaggtgcttcatatagaggcttcaccctgtag 440

                                                                       
Query: 241 ctcagtttctttctgcatggtggacattttgtaaaagcatcctttaatgtcctgaagtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagtttctttctgcatggtggacattttgtaaaagcatcctttaatgtcctgaagtga 500

                                                                       
Query: 301 aattgatgagtctataaatgtggctgaaaaaaaaattaatgccttacctgaactatagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattgatgagtctataaatgtggctgaaaaaaaaattaatgccttacctgaactatagaa 560

                                                                    
Query: 361 gagaaagaatagganaccagatcctaatgaagtagcattgtggatgagcagcaggcc 417
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaaagaataggaaaccagatcctaatgaagtagcattgtggatgagcagcaggcc 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |