Query= MSMg01no356_k18.b1 MSMg01no356_k18.b1 CHROMAT_FILE:
MSMg01no356_k18.b1 PHD_FILE: MSMg01no356_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:28 2005
(568 letters)
>mm_chr11_97491420_97492387
Length = 968
Score = 1048 bits (542), Expect = 0.0
Identities = 561/572 (98%), Gaps = 9/572 (1%)
Strand = Plus / Plus
Query: 4 ggaattcgctatatatgtgcaagattcataaaggaaaaaaataaatttggagaaagggga 63
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 199 ggaattcgctatatatgtgcaagattcataaaagaaaaaaataaatttggagaaagggga 258
Query: 64 gcttcgacacacccacggaagacaataagctgactttctctccgtacttgtttccttttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcttcgacacacccacggaagacaataagctgactttctctccgtacttgtttccttttc 318
Query: 124 ttggtgaagtatggaagtgccccacatcttaacggaattccaacgcgctggcaccgttgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttggtgaagtatggaagtgccccacatcttaacggaattccaacgcgctggcaccgttgg 378
Query: 184 gagcctccagatcccaggactcgaccatctggatcctgagcgacctgaatgggtggaaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gagcctccagatcccaggactcgaccatctggatcctgagcgacctgaatgggtggaaaa 438
Query: 244 gaccaaaaaccttactctccatccacaaacaaaaagtaaataatttccagaacatgctct 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 439 gaccaaaaaccttactctccatccacaaacaaaaagtgaataatttccagaacatgctct 498
Query: 304 gataatgtacacatctctcacatctcttcccctctagttcctacacagcctgctcataat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 499 gataatgtacacatctctcacatctcttcccctctagttcctacacagcctgctcat--t 556
Query: 364 t-------tggcttgttccttagtgctgacctctcctcggagtctagaaagagctggtgc 416
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgtgaaactggcttgttccttagtgctgacctctcctcggagtctagaaagagctggtgc 616
Query: 417 cctggctgcacagtcgagcccagcggccagtagagcatccagtcttgatcactgctatat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cctggctgcacagtcgagcccagcggccagtagagcatccagtcttgatcactgctatat 676
Query: 477 ccctactgcccaaacggcacaataaacatttgtgagtctttgggctattcatcgtcatcc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ccctactgcccaaacggcacaataaacatttgtgagtctttgggctattcatcgtcatcc 736
Query: 537 taaaatcaggttagaaacagctgcttttcatc 568
||||||||||||||||||||||||||||||||
Sbjct: 737 taaaatcaggttagaaacagctgcttttcatc 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_k18.g1 MSMg01no356_k18.g1 CHROMAT_FILE:
MSMg01no356_k18.g1 PHD_FILE: MSMg01no356_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:28 2005
(403 letters)
>mm_chr11_97675233_97676035
Length = 803
Score = 748 bits (387), Expect = 0.0
Identities = 399/403 (99%), Gaps = 2/403 (0%)
Strand = Plus / Minus
Query: 2 cccccccccccccccccgagatccttaggtaaaccagtcagaggacaggcaggtctgtgt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 cccccccccccccccccgagatccttaggtaaaccagtcagaggacaggcaggtctgtgt 544
Query: 62 ttagtgctagaatatggaatagctggggcccacatgaccttcacccacctcagggacctg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttagtgctagaatatggaatagctggggcccacatgaccttcacccacctcagggacctg 484
Query: 122 ataggtggcttctccaagcagacactgtattgaaaagcctgacctggccatgtttagttc 181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atgggtggcttctccaagcagacactgtattgaaaagcctgacctggccatgtttagttc 424
Query: 182 tgggtgactgcacctaccacagctgtaaccagtgcagacgccctgactcacagactcaca 241
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgggtgactgcacccaccacagctgtaaccagtgcagacgccctgactcacagactcaca 364
Query: 242 agcaccgggtaagaaaac-agcggcccttgatggtcctttttccaagtatgacccacccc 300
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agcaccgggtaagaaaacga-cggcccttgatggtcctttttccaagtatgacccacccc 305
Query: 301 agctggccaacatgcccacaggaagtcataagctgccacctgcttgtgtactgggcactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agctggccaacatgcccacaggaagtcataagctgccacctgcttgtgtactgggcactc 245
Query: 361 tctctagccgcctgcaccaccctgtgaatgttttatatccctc 403
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tctctagccgcctgcaccaccctgtgaatgttttatatccctc 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
