BAC Information

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BAC

Clone NameMSMg01-358D10
Chromosome11 (Build37)
Map Location 87,129,864 - 87,130,319
singlet/doubletsinglet
Overlap genePpm1e
Upstream geneThrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37
Downstream geneRad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358D10.T7 (MSMg01no358_d10.b1)MSMg01-358D10.TJ (MSMg01no358_d10.g1)
ACCAG467923AG467924
length723735
length of high quality
(start - end)		480 (36 - 515)380 (65 - 444)
definitionCHROMAT_FILE: MSMg01no358_d10.b1 PHD_FILE: MSMg01no358_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:25 2005CHROMAT_FILE: MSMg01no358_d10.g1 PHD_FILE: MSMg01no358_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAGT
TGGAAAATAAAAGCCATCGTCTATCAAATTAACTATAATTAGGTATGTGA
GTAAGAGCAATAATATGTGGATGTTGTTCTGAACTTCTTAAAGGCGGGCT
AAGTAGAAATTATAGCTGAGACTGTTGTAACTGAACAGTACACTGCAGTA
ACATCCTTAAATACAATATGACAAGGAGCCTTCAGCCTAAACCCTGGACT
GCTCTGTGTCTCATGGGATGTGGTCTTTTGTGCAGACAGATTTTTTTTTT
TTTGAGATAGGGTTTCTCTTCATAGCCCTGGCTGCCCTGAAACTCACTCT
GTAGTCCAGGCTGGCCTTGAACTCAGAGATCCACCTGCCTCTGCTTCCCA
AATGCTGGGATTAAAGGCGTGGGCCACTGCTGCCCAGCCAGAATAGGATT
TTTTTTCTGGAGGAAATTTGTATTGCTTTAGAACTGCTTTGAAGAATTAT
CATATAGTGATAATGTTAGATTGATTTGTCTAAATCCACATAATTTCTGA
CAGCCTGCCATGATTTCATTCTTTGAATGATTACTAATAAAAGTCACACA
TATTCTACTAGTAGTACTTAAGGACTGGGCTGATAAGAGCTCTTTAATGA
GTTAGAACCCTGGGAGCACTCACTGTCCCCCATCTGCTGGTTGGTTTGAA
ATTGGGAAAGCTTCCGCTGGTCC

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATAGATCACTTGCTTCTGCTCTGGGTGCTAGAAACA
AAGCTGGTCCTGTTTTCTCTTTAAAGATTTATTTTAACCAGGCATTGGTG
GCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGTCGAATTTCT
GACTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC
TACACAGAGAAACCCTGTCTGGAAAAACAAAACAAAACAAACAAAAACGT
TTTATTTTTATTTTAAGTACATGAGTATTTTGCCTGCATATCTGTCTGTG
CCTGATGTTCATGCCTGGTGCCCAGGGAGGCCAGAAATGGGTGTTAGATC
CCCTGGAAATGGAGCTAAAGACAGTTGTGAGCTGCTATCTTGGTGCTGTG
AATTGTACCTGGGTCTTCTGGAAGAGCAGCAGGTGCTGAGCCATTTTTTT
CAGCCTTCTCTTGTTTTTTGAGACAGGATCTCACTCTGTANGCCATGTTG
GGCTGGAACTAAAGATAAACCTCCTTCCACGCTGGGATTACGGACATAAA
TTTTCTAACCTCCTTTAAAATTTGTATTAAGACCAAAACTCTGGTTGCCC
TCTCCCCCCGAAATCTGGGGAATGATGGTGGTGGAACCGGGTTGACCCCG
AAAAATAATTGTTCTGATAGTAAGCCCCTAATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_d10.b1 MSMg01no358_d10.b1 CHROMAT_FILE:
MSMg01no358_d10.b1 PHD_FILE: MSMg01no358_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:25 2005
         (480 letters)



>mm_chr11_87129864_87130743
          Length = 880

 Score =  801 bits (414), Expect = 0.0
 Identities = 440/456 (96%), Gaps = 13/456 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagttggaaaataaaagccatcgtctatcaaattaactataattaggtatgtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaattctcagttggaaaataaaagccatcgtctatcaaattaactataattaggtatgtg 397

                                                                       
Query: 65  agtaagagcaataatatgtggatgttgttctgaacttcttaaaggcgggctaagtagaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agtaagagcaataatatgtggatgttgttctgaacttcttaaaggcgggctaagtagaaa 337

                                                                       
Query: 125 ttatagctgagactgttgtaactgaacagtacactgcagtaacatccttaaatacaatat 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 336 ttatagctgagactgttgtaactgaacagtacactgcagtaacatccttaaatacattat 277

                                                                       
Query: 185 gacaaggagccttcagcctaaaccctggactgctctgtgtctcatgggatgtggtctttt 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 276 gacaaggagccttcagcctaaacactggactgctctgtgtctcatgggatgtggtctttt 217

                                                                       
Query: 245 gtgcagacaga------------tttttttttttttgagatagggtttctcttcatagcc 292
           |||||||||||            |||||||||||||||||||||||||||||||||||||
Sbjct: 216 gtgcagacagatttttttttttttttttttttttttgagatagggtttctcttcatagcc 157

                                                                       
Query: 293 ctggctgccctgaaactcactctgtagtccaggctggccttgaactcagagatccacctg 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ctggctgccctgaaactcactctgtagtccaggctggccttgaactcagagatccacctg 97

                                                                       
Query: 353 cctctgcttcccaaatgctgggattaaaggcgtgggccactgctgcccagccagaatagg 412
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 96  cctctgcttcccaaatgctgggattaaaggcgtgggtcactgctgcccagccagaatagg 37

                                               
Query: 413 a-ttttttttctggaggaaatttgtattgctttaga 447
           | ||||||||||||||||||||||||||||||||||
Sbjct: 36  atttttttttctggaggaaatttgtattgctttaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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