BAC Information

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BAC

Clone NameMSMg01-359I13
Chromosome11 (Build37)
Map Location 121,540,104 - 121,701,575
singlet/doubletdoublet
Overlap geneMetrnl, Ptchd3
Upstream geneAspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1
Downstream geneLOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359I13.T7 (MSMg01no359_i13.b1)MSMg01-359I13.TJ (MSMg01no359_i13.g1)
ACCAG468926AG468927
length740718
length of high quality
(start - end)		562 (32 - 593)520 (60 - 579)
definitionCHROMAT_FILE: MSMg01no359_i13.b1 PHD_FILE: MSMg01no359_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:02 2005CHROMAT_FILE: MSMg01no359_i13.g1 PHD_FILE: MSMg01no359_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,540,104 - 121,540,661)(121,701,056 - 121,701,575)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTCTTTCA
GCAGCACATGCTCCTAGAATCCAAATCTGGGGATTAGAGTTTCTATAAGG
CAACCCTGTGATGCAGTCAGTAGGAGTAAATCCTGTGTGATGTGTTCCTG
AATGAGGGTAAACCCTTGTTGTGTAGCAGTTTCTTCCTAGATTAAAGCCT
TCCATCTTGAAGGAGGAAACCTCTTAAGACATAGACTATATGAGAGGAGG
TTGAAGCAACCACATATTTTATGACAGGGTGTTCTAAGGTGTACCGGCTA
GTTTTGTGTATCAACTTGACACAAGCTAGAGTCATCAGAGAGGAAGGAGC
CTCAGCTGAGGACCCAGCTGTTAGGCGTTTCCTCAACCAGTAATCAATGG
GGAAGAGCCCAGCCCATGGTAGGTGGTGCTATCCCTGGGCAGGTAGTCTT
GGGTTTTATAAGAAAGCAGACTGAGCAAGCCATATGAGGCAATGCAGTAA
GCAGCACCTCTGCATGGCCTCTGCATCAGTTCCTGTCTCTAGGATCCTGC
CCTGTTTGAGTTCCTGTCCTAACTCCTTTCAGTGATGAACAGCAATATGA
AATGATAAACCAAATAAACCCTTTTTTCTCAAACTTGCTTTTTTGGTCAT
GATGCCTTTCTCGCTGGTTCTAAATTGACCCGTAACCCTTAAGATCCCCT
TTTCCCCCAAAATAAATTTATTATTAAAAAACGTTGAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXACTTGAGACTACAGCTGGGTCTGCTTGCACTTGTGTGTGCT
TTTATTCCCATGTGTATTTACAGTAAGTCTTGGAACTGCAATGTTGATCT
CTACTTCTTTTTCATAGATTACAAGTTAAGGTGGGAGATACTTGGAATCA
CAAGCTGGCCTGTAGTTCAGATATTCATGTACATGATGGAGGGAGAAAGA
TCCAAAACTTGCACAAAGATAGAGGGATTGTCATAAACTGTATAGTGGCA
CCCCAGGACTAGCACCTCTCAAGTCTCCAGCTGAACAAAGGGAACAATTA
GAGACACTGAGGACCAAGAATGGAATGCATCGGTCTCTTAGATGTTTAAG
AACTGACTTTATTACTCATAGAATTTTATTCAGAAATTCTTCTCACAGTT
CTTAAGTTGCTGGAATCACATATACAAATCTATACACACACTCCTGTAGA
TACAAACTGTACAAATACAGTGATTACAGACTGACTTGCAGTAAACACAT
CCCCCTTAACTATAGTTATTGATGACTGTGGAGAAAGAGAGACTCTTGAA
CTGTATAGAAGCATCACATTTCAATAAAAAACCTATGGCCAATGAGCTGA
AGCAGGAAATATGAGGTGGGAGTTCCAGCACAGAGGGTGAGGGATTCTGG
GAAATAATCAGCATGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_i13.b1 MSMg01no359_i13.b1 CHROMAT_FILE:
MSMg01no359_i13.b1 PHD_FILE: MSMg01no359_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:02 2005
         (562 letters)



>mm_chr11_121539900_121540861
          Length = 962

 Score = 1048 bits (542), Expect = 0.0
 Identities = 554/558 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtctttcagcagcacatgctcctagaatccaaatctggggattagagtttcta 64
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtctttcagcagcacatgcttctagaatccaaatctggggattagagtttcta 264

                                                                       
Query: 65  taaggcaaccctgtgatgcagtcagtaggagtaaatcctgtgtgatgtgttcctgaatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaggcaaccctgtgatgcagtcagtaggagtaaatcctgtgtgatgtgttcctgaatga 324

                                                                       
Query: 125 gggtaaacccttgttgtgtagcagtttcttcctagattaaagccttccatcttgaaggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggtaaacccttgttgtgtagcagtttcttcctagattaaagccttccatcttgaaggag 384

                                                                       
Query: 185 gaaacctcttaagacatagactatatgagaggaggttgaagcaaccacatattttatgac 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 gaaacctcttaagacatagactatatgagaggaggttgaaacaaccacatattttatgac 444

                                                                       
Query: 245 agggtgttctaaggtgtaccggctagttttgtgtatcaacttgacacaagctagagtcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agggtgttctaaggtgtaccggctagttttgtgtatcaacttgacacaagctagagtcat 504

                                                                       
Query: 305 cagagaggaaggagcctcagctgaggacccagctgttaggcgtttcctcaaccagtaatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagagaggaaggagcctcagctgaggacccagctgttaggcgtttcctcaaccagtaatc 564

                                                                       
Query: 365 aatggggaagagcccagcccatggtaggtggtgctatccctgggcaggtagtcttgggtt 424
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgggggagagcccagcccatggtaggtggtgctatccctgggcaggtagtcttgggtt 624

                                                                       
Query: 425 ttataagaaagcagactgagcaagccatatgaggcaatgcagtaagcagcacctctgcat 484
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttataagaaagcaggctgagcaagccatatgaggcaatgcagtaagcagcacctctgcat 684

                                                                       
Query: 485 ggcctctgcatcagttcctgtctctaggatcctgccctgtttgagttcctgtcctaactc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggcctctgcatcagttcctgtctctaggatcctgccctgtttgagttcctgtcctaactc 744

                             
Query: 545 ctttcagtgatgaacagc 562
           ||||||||||||||||||
Sbjct: 745 ctttcagtgatgaacagc 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_i13.g1 MSMg01no359_i13.g1 CHROMAT_FILE:
MSMg01no359_i13.g1 PHD_FILE: MSMg01no359_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:03 2005
         (520 letters)



>mm_chr11_121700856_121701775
          Length = 920

 Score =  982 bits (508), Expect = 0.0
 Identities = 517/520 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgagactacagctgggtctgcttgcacttgtgtgtgcttttattcccatgtgtattt 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 acttgacactacagctgggtctgcttgcacttgtgtgtgcttttattcccatgtgtattt 661

                                                                       
Query: 61  acagtaagtcttggaactgcaatgttgatctctacttctttttcatagattacaagttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 acagtaagtcttggaactgcaatgttgatctctacttctttttcatagattacaagttaa 601

                                                                       
Query: 121 ggtgggagatacttggaatcacaagctggcctgtagttcagatattcatgtacatgatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ggtgggagatacttggaatcacaagctggcctgtagttcagatattcatgtacatgatgg 541

                                                                       
Query: 181 agggagaaagatccaaaacttgcacaaagatagagggattgtcataaactgtatagtggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agggagaaagatccaaaacttgcacaaagatagagggattgtcataaactgtatagtggc 481

                                                                       
Query: 241 accccaggactagcacctctcaagtctccagctgaacaaagggaacaattagagacactg 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gccccaggactagcacctctcaagtctccagctgaacaaagggaacaattagagacactg 421

                                                                       
Query: 301 aggaccaagaatggaatgcatcggtctcttagatgtttaagaactgactttattactcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aggaccaagaatggaatgcatcggtctcttagatgtttaagaactgactttattactcat 361

                                                                       
Query: 361 agaattttattcagaaattcttctcacagttcttaagttgctggaatcacatatacaaat 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agaattttattcagaaattctcctcacagttcttaagttgctggaatcacatatacaaat 301

                                                                       
Query: 421 ctatacacacactcctgtagatacaaactgtacaaatacagtgattacagactgacttgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctatacacacactcctgtagatacaaactgtacaaatacagtgattacagactgacttgc 241

                                                   
Query: 481 agtaaacacatcccccttaactatagttattgatgactgt 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agtaaacacatcccccttaactatagttattgatgactgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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