BAC Information

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BAC

Clone NameMSMg01-359O19
Chromosome11 (Build37)
Map Location 88,105,352 - 88,276,821
singlet/doubletdoublet
Overlap gene1700106J16Rik, LOC668793, Msi2
Upstream genePpm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23
Downstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359O19.T7 (MSMg01no359_o19.b1)MSMg01-359O19.TJ (MSMg01no359_o19.g1)
ACCAG469223AG469224
length755790
length of high quality
(start - end)		376 (21 - 396)275 (54 - 328)
definitionCHROMAT_FILE: MSMg01no359_o19.b1 PHD_FILE: MSMg01no359_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:31 2005CHROMAT_FILE: MSMg01no359_o19.g1 PHD_FILE: MSMg01no359_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,276,453 - 88,276,821)(88,105,352 - 88,105,624)
sequence
CGACTCCTATATCGAGAGGATCCGCGGAATTCATGTCAATTCCTGTGACT
TGAAGACAGCCATTTTCTTCTCATAATAGACCTCGTTAACCCGTCTCTAT
ACTGACTGGCGCTTTTTTATTATGACGATTGGAGGACTTCAGTCTGAATG
TTAGAACGTCAGGTTTCCAAGTGCCTGCTGGAGAAGCGGGTGTATAATGA
CAGTCTTCCATGGCAGTAATGGTGGCCAGCGCCTGCTCTGGCACAGACAT
TATTAGATCTGAGTCTCCTGAAGGGACAATTTGTAATGACCTGGTATCTA
TGGTGATGGGGGGTAGGGAACAGGAAGGCAGCAGAAGGGACCCTTATCAC
CCCCACCATCCCATCAGTGTGAGACAGCTGGGGTATAGCTCCTGATAACC
GATGTCACAGCCAATGGGAGGCCGCTGTGTGGAGCTGGCGATTCCAGAGC
GATGAAAGCTACCTCATGAAAATAGAACCCATGACTAAAATGACTGCTTT
TGGGAACCGTCTTGTCTCTTTTTGATTGGAGACTATAGACCTCCTCACTA
GGCTCTATGTGGACGAATAAAGAAATGGTAATTTTTGATTACACTTTTCT
GCTTCCCCTTTCTTTGCCCCTTATTTTTTTCTTATCGCTTCTTTCTTCCT
CCCTTTTGCACCTTTCTTTTTTTATTTTTCCCCTTCCGCTTTTTTTTTTT
TTTCCCCTTTTATCTTTATCCCTTCTTCCTCCTTTTATCTTCTCATATCT
CTAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCCAGGCTGCGGTTTCTCTGAAGGCCAGTAGGTGTCAATGTGTCAGCA
GAAAAGCTAGGGGTGCCTGGCATTTGAGAGCCACCTATGAACCGAAATTC
CATTTCTTCTGAGTACCACTGTTTGTGGGGCAGCAGGCAGGACACTTGAG
GGTAAACAGGTTAAGGGACTCAAAAATCTCTGTTTGCCAGAGTTTACCGT
GCCTAAGCAGATGGTAGACCCAGGTAACAGTTATAAGAGACAGAAGGAAG
AGAATTGGGGGGAAGGGGTATGGAAGTCNTCTTCTCCCTTTCTCTTTTTT
CTTCCCTTTTCCCCTTTTCCCCCCTTTTTTTTTTTTTTTGCCCCCCCCTT
CCCNNCNNTNCTTTTGTTTTTTTTCCTCCCCCCTTTCTTTTCCTTTCTCC
TTCCCCCCTTCTCCCTCCCTTTTTTTCCTCTTCTCCTTCCTTGGTGTTCT
CTCTCGTTTTCATCTCTTTTGCTTTTTTTCCCCCTTTCCTTTTCCCTCCC
CTTTTTCCTTCTCTTTTCCCCCTCTCTTTTTCCCCCCCCCCTATCTATCA
TCTCCGCCCTTTTTCTTATTCTTCCCTTTTTTTTTTTTTTTTTCCCCCCT
CCCCCTCCCTTTTTACCCCCTCCCATTTCCATATATACTATTATCCTGTT
CTACTCCAAAACTATCTATCTTCCCCTTTATTCTTCTTTCCTTCCACATA
CCCCTCTTTTTCCCCCCCCTATTCCTCTTTTCGCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_o19.b1 MSMg01no359_o19.b1 CHROMAT_FILE:
MSMg01no359_o19.b1 PHD_FILE: MSMg01no359_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:31 2005
         (376 letters)



>mm_chr11_88276247_88277022
          Length = 776

 Score =  706 bits (365), Expect = 0.0
 Identities = 368/369 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcatgtcaattcctgtgacttgaagacagccattttcttctcataatagacctcgt 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaattcatgtcaattcctgtgacttgaagacagccattttcttctcataatagacctcgt 516

                                                                       
Query: 67  taacccgtctctatactgactggcgcttttttattatgacgattggaggacttcagtctg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 taacccgtctctatactgactggcgcttttttattatgacgattggaggacttcagtctg 456

                                                                       
Query: 127 aatgttagaacgtcaggtttccaagtgcctgctggagaagcgggtgtataatgacagtct 186
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aatgttagaacgtcgggtttccaagtgcctgctggagaagcgggtgtataatgacagtct 396

                                                                       
Query: 187 tccatggcagtaatggtggccagcgcctgctctggcacagacattattagatctgagtct 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tccatggcagtaatggtggccagcgcctgctctggcacagacattattagatctgagtct 336

                                                                       
Query: 247 cctgaagggacaatttgtaatgacctggtatctatggtgatggggggtagggaacaggaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cctgaagggacaatttgtaatgacctggtatctatggtgatggggggtagggaacaggaa 276

                                                                       
Query: 307 ggcagcagaagggacccttatcacccccaccatcccatcagtgtgagacagctggggtat 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ggcagcagaagggacccttatcacccccaccatcccatcagtgtgagacagctggggtat 216

                    
Query: 367 agctcctga 375
           |||||||||
Sbjct: 215 agctcctga 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_o19.g1 MSMg01no359_o19.g1 CHROMAT_FILE:
MSMg01no359_o19.g1 PHD_FILE: MSMg01no359_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:32 2005
         (275 letters)



>mm_chr11_88105152_88105826
          Length = 675

 Score =  528 bits (273), Expect = e-154
 Identities = 273/273 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaggctgcggtttctctgaaggccagtaggtgtcaatgtgtcagcagaaaagctagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaggctgcggtttctctgaaggccagtaggtgtcaatgtgtcagcagaaaagctagggg 260

                                                                       
Query: 61  tgcctggcatttgagagccacctatgaaccgaaattccatttcttctgagtaccactgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcctggcatttgagagccacctatgaaccgaaattccatttcttctgagtaccactgtt 320

                                                                       
Query: 121 tgtggggcagcaggcaggacacttgagggtaaacaggttaagggactcaaaaatctctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtggggcagcaggcaggacacttgagggtaaacaggttaagggactcaaaaatctctgt 380

                                                                       
Query: 181 ttgccagagtttaccgtgcctaagcagatggtagacccaggtaacagttataagagacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgccagagtttaccgtgcctaagcagatggtagacccaggtaacagttataagagacag 440

                                            
Query: 241 aaggaagagaattggggggaaggggtatggaag 273
           |||||||||||||||||||||||||||||||||
Sbjct: 441 aaggaagagaattggggggaaggggtatggaag 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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