Query= MSMg01no360_g04.b1 MSMg01no360_g04.b1 CHROMAT_FILE:
MSMg01no360_g04.b1 PHD_FILE: MSMg01no360_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:07 2005
(275 letters)
>mm_chr11_120978930_120979605
Length = 676
Score = 321 bits (166), Expect = 3e-92
Identities = 250/282 (88%), Gaps = 13/282 (4%)
Strand = Plus / Plus
Query: 5 gaattcaatgaat-tctcctctggagaagtagaaaggcttgagcttccagaaacttcttc 63
||||| ||||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 197 gaattaaatgaatacct-ctctggagaagtagacaggcttgagcttccagaaacttcttc 255
Query: 64 agcttcacacttgctccaatatatggggagctagaaagacagagaaaatgaggtttggct 123
|||||||||||||||||||| | ||| ||||| ||||| ||||| |||||||||||| ||
Sbjct: 256 agcttcacacttgctccaatgtctggagagcttgaaaggcagaggaaatgaggtttgcct 315
Query: 124 -----ca-ccctg---ctgggcccgctgcagggctcccc-tgaggagagggtgttggggc 173
|| ||| | | ||| | |||||||||| |||| ||||||||||||||||| ||
Sbjct: 316 ccccccaccccagcccccggg-ctgctgcagggccccccttgaggagagggtgttggagc 374
Query: 174 tctggcccccggggttccctgttcactctggacaggctggggtgacatcagaggtgtcct 233
|||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 375 tctggcccccggggctccctgctcactctggacaggctggggtgacatcagagttgtcct 434
Query: 234 cagggctcaaggccccgacctcacacttgcgcccggctacca 275
|||||||||||||||||||||||||||||| |||||||||||
Sbjct: 435 cagggctcaaggccccgacctcacacttgcacccggctacca 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 676
Length adjustment: 9
Effective length of query: 266
Effective length of database: 667
Effective search space: 177422
Effective search space used: 177422
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no360_g04.g1 MSMg01no360_g04.g1 CHROMAT_FILE:
MSMg01no360_g04.g1 PHD_FILE: MSMg01no360_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:07 2005
(424 letters)
>mm_chr11_120865837_120866660
Length = 824
Score = 804 bits (416), Expect = 0.0
Identities = 422/424 (99%)
Strand = Plus / Plus
Query: 1 agatgagaggagggaatatgactatatcacaaatacagcagacaacgtggctaaaggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgagaggagggaatatgactatatcacaaatacagcagacaacgtggctaaaggagg 260
Query: 61 cttaggacagacctaagcaattttggaagtgagcaaattctgaaaggccaaaggcagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaggacagacctaagcaattttggaagtgagcaaattctgaaaggccaaaggcagaag 320
Query: 121 gaactgcacagagacactcgcccacatttggtaaagttgattggcaaaggctcccgaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaactgcacagagacactcgcccacatttggtaaagttgattggcaaaggctcccgaggc 380
Query: 181 ttctgaccaagcacctgaaatcaagaatgaggtagatggttcctcactgtggagcagcgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgaccaagcacctgaaatcaagaatgaggtagatggttcctcactgtggagcagcgc 440
Query: 241 aggtggaagtaaattaggaccagagacaccaattgagctcctacctaatgcaaaggcgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtggaagtaaattaggaccagagacaccaattgagctcctacctaatgcaaaggcgta 500
Query: 301 tggatacatgtttttcacatatgtatatgcagagggtagcacacatatgcctctactttt 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 tggatacatgtttttcacatatgtatatgcagagggtagcacacatacgcctctactttt 560
Query: 361 ggtcagttaaaacaattgcacttcagtgaacactaataccacagaggcatcattctttag 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 ggtcagttaaaacaattgcacttcagtgaacacaaataccacagaggcatcattctttag 620
Query: 421 taaa 424
||||
Sbjct: 621 taaa 624
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
