Query= MSMg01no360_h19.b1 MSMg01no360_h19.b1 CHROMAT_FILE:
MSMg01no360_h19.b1 PHD_FILE: MSMg01no360_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:15 2005
(472 letters)
>mm_chr11_99223467_99224338
Length = 872
Score = 837 bits (433), Expect = 0.0
Identities = 463/479 (96%), Gaps = 11/479 (2%)
Strand = Plus / Plus
Query: 5 gaattctaggctatcccaggctatctctaaaacagaactagactaaaaaaacaaaacaaa 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gaattctaggctaaccaaggctatctctaaaacagaactagactaaaaaaacaaaacaaa 253
Query: 65 aaccccaacccaaacaaaaattcaaacccaaaccaaacaa----cagcacaaagtgaaat 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 254 aaccccaacccaaacaaaaattcaaacccaaaccaaacaaacaacagcacaaagtgaaat 313
Query: 121 aaaaagagttgagtttgttttgttttgtgtttcttttggtaagagcaaaatacatataca 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 314 aaaaagagttgagtttgttttgttttgtgtttcttttggtgagagcaaaatacatataca 373
Query: 181 catgtgagatgtgagctacaaaaaaaaaaaaaaaaaaaaaaa-------cccagatgata 233
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 374 catgtgagatgtgagctacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccagatgata 433
Query: 234 taattgtgctatttttgtttaaaactgggattactgggcatagaaacaattggtaaaagt 293
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 434 taattgtgctatttttgtttaaaactgggattactgggcataaaaacaagtggtaaaagt 493
Query: 294 atacactaacttaaaatgtatttttttcttataatattaaatagcgaaggtcaaaacaag 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atacactaacttaaaatgtatttttttcttataatattaaatagcgaaggtcaaaacaag 553
Query: 354 aaaaaccagaacaaaacaaaacaaaaaaccctccccaaaacaaaatcataaaaaaatcca 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaaaaccagaacaaaacaaaacaaaaaaccctccccaaaacaaaatcataaaaaaatcca 613
Query: 414 gggtaaaccaagaatatagtctaaagaccctgacacgatactgcacatctttagttcca 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gggtaaaccaagaatatagtctaaagaccctgacacgatactgcacatctttagttcca 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_h19.g1 MSMg01no360_h19.g1 CHROMAT_FILE:
MSMg01no360_h19.g1 PHD_FILE: MSMg01no360_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:15 2005
(440 letters)
>mm_chr11_99367907_99368746
Length = 840
Score = 828 bits (428), Expect = 0.0
Identities = 437/440 (99%)
Strand = Plus / Minus
Query: 1 accagtctgagaacagatacaggttattgtaaataagtacaggctgtgctgtggagacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 accagtctgagaacagatacaggttattgtaaataagtacaggctgtgctgtggagacct 581
Query: 61 ggagaccagaagactgtgctagacagcattcatcccaccacattctcaatgcacaagtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ggagaccagaagactgtgctagacagcattcatcccaccacattctcaatgcacaagtcc 521
Query: 121 agttgttgggttcacatgagtttattgatcaaatactggttcttccctaccagctgcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agttgttgggttcacatgagtttattgatcaaatactggttcttccctaccagctgcaaa 461
Query: 181 actaagaggtcttaactggaggaacaagcaggaacgggggaagcctcattttcaatctcg 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 460 actaagaggtcttaactggaggaacaagcaggaatgggggaagcctcattttcaatctcg 401
Query: 241 ttcatgatgagtatagtgttaaaacagtagcttccagacatccatgtttccaacactcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttcatgatgagtatagtgttaaaacagtagcttccagacatccatgtttccaacactcca 341
Query: 301 cttgtggtttcatcagcaattatgggttgtaagagctgtagaggacttgttggttctgac 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cttgtggtttcatcagcaattgtgggttgtaagagctgtagaggacttgttggttctgac 281
Query: 361 ctatcttacaattaacaggatacggggtaatcaggtgtgatcttcagggtctattcccag 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 280 ctatcttacaattaacaggatacggggtaatcaggtttgatcttcagggtctattcccag 221
Query: 421 gatctctttaagaaagggac 440
||||||||||||||||||||
Sbjct: 220 gatctctttaagaaagggac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
