BAC Information

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BAC

Clone NameMSMg01-360L11
Chromosome11 (Build37)
Map Location 102,067,419 - 102,067,806
singlet/doubletsinglet
Overlap geneHdac5
Upstream geneEzh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3
Downstream geneBC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360L11.T7 (MSMg01no360_l11.b1)MSMg01-360L11.TJ (MSMg01no360_l11.g1)
ACCAG469825AG469826
length785797
length of high quality
(start - end)		254 (66 - 319)389 (76 - 464)
definitionCHROMAT_FILE: MSMg01no360_l11.b1 PHD_FILE: MSMg01no360_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:32 2005CHROMAT_FILE: MSMg01no360_l11.g1 PHD_FILE: MSMg01no360_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTAATATTGCGGCGCTATACGACTCCTATAGTCAGAAATCCGCGGAATT
CAGGATATTCTCGCCTGTCTCTGTGGGGAGTGGGTGGGAGAGGGCTGGAG
AGATGGCTCAGTGTTTGTACTTTATCATGAGGTCCAAAGTTCAAATCCCA
GCACCCACACTGAGTAGCTCAAAATACATGTGACTCTATCTCCATGGGCT
CCAACACTTTCTTCTGGTCTCCAAGGGTATACACACACATAAGTGCACAC
ACACTCATACACACACACACACATGTGCATGCTCACTCACACACACATAA
ATAATAAAAAATAAATATTTTTTATTAAAAATAAAACAAAGCATAAAAAG
ATAAAATGGAGTTTCATATGTACGTATATGTCCTATAGTACAGGAGTTTG
GGGGTTTTGCCCCGCCCTGGTAGGATGCTTTTGTTTTAAAAAAGCTTGTT
AAAGTTATTACCTCTTCTTTCACACTTAAATTTGAATTCCTGATAACTCA
TAATCACTTTTTTTAAAATTCATATTTAATCCAATCTACTATTTTGTTAC
AACAAAGTTTATTTCCTCCTTCTCCTAATACCCACCCACTTTTACCCTTT
TCCTATATTCAGCTTACCTGGCTCTTTTATACTTTTCAATTTACAAGTAT
CTTTTTCTTATTTTACTTTGCTTTTATTCTCCTCACACTTCATCCCAAAA
CGTACCTTGCTGAGAAATATACCTTACCTCTCTCATATAATATGTCCTCC
CCGTTCCATAATTCGCACTTCCTCTAATATTTTTG

TCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGTTGTCCAAGTCAAAGGAGCCCA
CGCCAGGCGGCCTCAACCATTCCCTCCCACAGCACCCCAAATGCTGGTAA
TGGCTCTGGGGGACAAGGGTGGACAGAAGGGTCCTGCTCAGGTTGCCTGG
TTATGGGAACAGCTTGGGGAACCCTGCCTTGCAACCACAGTTCTGCAGTC
TATTCTAGGTGGGAGCTCCCCACCCCACTTCTCTTCTTCGCCTTCTCAGG
GTCCATGTTTCTCTCTGTGATGTTCTTACCTTAGCTCCCTGAGGGGTTTC
CACTCATGTGGCCCTTCCATAGCTCTACTGTGCTGTGCTGGGTGTGGTAG
CATATGTCTATAGTTGCACAACTCAGGAGGTAGAGGCAGAATGGATACAG
GTTCAAGTGCTAGCCTGTGTTACATAGCAAGTCTGAGGCCCGCCTGGACT
ACATGAGACCTTGTTTCAAAAAATCCTAATATAAAAACAAAACCTCCCAA
GTCCAAAAACTAACTATCAAGTGGCTATGTCGGTGTTGAGTCCTGTTAAA
ATGTTCTGCGTTTTTCACTTTCTTATTTACCCTTGTCTATCTTTTCCTCC
TTTATCCCCTTCCCTCCCCTTTTTTTTTTTCCTTTTACATTCTCCCCTCT
CCACCTATCTTCACCTTTTCGCGCTGTCTCTTCCATTCTTCATATTCTTT
ATCGTTTTCTCTTTTTCTTCCCACTTTTTTTCCCACTATCCTCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_l11.g1 MSMg01no360_l11.g1 CHROMAT_FILE:
MSMg01no360_l11.g1 PHD_FILE: MSMg01no360_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:32 2005
         (389 letters)



>mm_chr11_102067297_102068084
          Length = 788

 Score =  690 bits (357), Expect = 0.0
 Identities = 381/389 (97%), Gaps = 1/389 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttgtccaagtcaaaggagcccacgccaggcggcctcaaccattccctcccacagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctgttgtccaagtcaaaggagcccacgccaggcggcctcaaccattccctcccacagcac 451

                                                                       
Query: 61  cccaaatgctggtaatggctctgggggacaagggtggacagaagggtcctgctcaggttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cccaaatgctggtaatggctctgggggacaagggtggacagaagggtcctgctcaggttg 391

                                                                       
Query: 121 cctggttatgggaacagcttggggaaccctgccttgcaaccacagttctgcagtctattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cctggttatgggaacagcttggggaaccctgccttgcaaccacagttctgcagtctattc 331

                                                                       
Query: 181 taggtgggagctccccaccccacttctcttcttcgccttctcagggtccatgtttctctc 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 taggggggagctccccaccccacttctcttcttcgccttctcagggtccatgtttctctc 271

                                                                       
Query: 241 tgtgatgttcttaccttagctccctgaggggtttccactcatgtggcccttccatagctc 300
           ||| |||| |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgtaatgtcca-accttagctccctgaggggtttccactcatgtggcccttccatagctc 212

                                                                       
Query: 301 tactgtgctgtgctgggtgtggtagcatatgtctatagttgcacaactcaggaggtagag 360
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 211 tactgtgctgtgctgggtgtggtagcatatgtctatagttgtagaactcaggaggtagag 152

                                        
Query: 361 gcagaatggatacaggttcaagtgctagc 389
           ||||||||||||||||||||||| |||||
Sbjct: 151 gcagaatggatacaggttcaagtactagc 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 788
Length adjustment: 9
Effective length of query: 380
Effective length of database: 779
Effective search space:   296020
Effective search space used:   296020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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