BAC Information

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BAC

Clone NameMSMg01-361C14
Chromosome11 (Build37)
Map Location 118,436,290 - 118,578,314
singlet/doubletdoublet
Overlap geneD11Bwg0517e
Upstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik
Downstream geneEnpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361C14.T7 (MSMg01no361_c14.b1)MSMg01-361C14.TJ (MSMg01no361_c14.g1)
ACCAG470162AG470163
length749736
length of high quality
(start - end)		574 (49 - 622)341 (81 - 421)
definitionCHROMAT_FILE: MSMg01no361_c14.b1 PHD_FILE: MSMg01no361_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:07 2005CHROMAT_FILE: MSMg01no361_c14.g1 PHD_FILE: MSMg01no361_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,577,744 - 118,578,314)(118,436,290 - 118,436,625)
sequence
NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGGCGCCTCCACACCTGTGCTGTGTGTGTGAGACTGTGACT
GTGGGTAATTCTTCCTCCCCCTGTATGGAAGCCAGGTCCATAAGTACCAG
CAACGGGCAGCAGGAAGCCACCTGCAGTGGATATTCACTGGCAACTCACA
GGGGCCTGATTTCACAGGGATGGCTGGCTGACAGTGTCTCCCTAGGTGGG
CTACTCCTGCACCGTGTGCTGCCCACAAGAGTCTAGGGTGCTGCTGAGAC
TCCTAGGAAGAGTGTCTTGTCCCACCCAACGACGTGAGCATTTATCCTGC
TTCTACTCCGTGGAGGGAGCAAGGAAGGTGAGGACCACCCGTTTCCCCCA
GATTGTGGGGCAGGAAGGTGGAAGACATGGTGAGTTATGCATGCTGGGTA
AATCTTACCAGCACAGCCTAGGCCCTGAGTCAGGGAAAAGTGCTGCCTTC
TGTTTGGTGTGAGCCTTCTGTGTCCCTCCTAGTGCGGTAGTCTAGAGCCC
TTTCATGGAACTCCTAAGGCATTGGCAAACAAGTACACAGGTCTCCCAAC
AGGAATGAGAAACAGGGGTTAAGCTGGAGGTGAAACTCAGGAGATAGGAG
AGGAATGGGGGGGGTAAGTTTACCCCTTCCTTCTTTTTCCTTTTCTCTTT
CCCCCCCCTTTTCTTTCTTTCCCCCTTTCTCATCTTCTTCTTTCCTTCT

NNNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGGAAGCCCTTGGCTTTCC
CTTTGACTGAACTATTTGGCATATGCCCTTCTGCAAATATCTTCATCATT
AGCCCTTGGCTCTCTCTCCTAACAGGATCAACCCTCAACCAAATCTGTTA
ATGGAACAGTCATTTGCAATAGCCCAGGCATCTACTAATCGCGCTGCTGC
TCGGGCTGGGCGGTAATTATCTCCAATCTCTGCTTTCTCGTTAGGTGGGA
GGTCACAGGAACCCAGTGGGCTGCTGAACCCTCTGATGAAGCCGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGNGNGTGNGTNTTTTNNTTTTGTTTTT
TTTTTTTTTGGTTGGGTTTTTTTTTGGGGTTTTTGTTTTTTTTTTTTTTG
TGTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTGTGTTTTTGTTGGTTTTT
GGGTTTTTTTGTTTTTGTTTTTGTTTTGGGGGTTTTTTTTTTTTTTTTTT
TTGGGTTTGTTGTTTGGTGGTTTCGTTTTTCTTTTTTTTTTTTTTTGTGT
TTTTTTGTGTGTTTGTTTTTGGTTGGTTTTTGTTTTGTTTTTTTTTTTTT
TTTGTTTTTTTTTTTTTTTGTCTTTTCTCTTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_c14.b1 MSMg01no361_c14.b1 CHROMAT_FILE:
MSMg01no361_c14.b1 PHD_FILE: MSMg01no361_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:07 2005
         (574 letters)



>mm_chr11_118577541_118578514
          Length = 974

 Score = 1081 bits (559), Expect = 0.0
 Identities = 568/571 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaggcgcctccacacctgtgctgtgtgtgtgagactgtgactgtgggtaattc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ggaattccaggcgcctccacacctgtgctgtgtgtgtgagactgtgactgtgggtaattc 715

                                                                       
Query: 64  ttcctccccctgtatggaagccaggtccataagtaccagcaacgggcagcaggaagccac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ttcctccccctgtatggaagccaggtccataagtaccagcaacgggcagcaggaagccac 655

                                                                       
Query: 124 ctgcagtggatattcactggcaactcacaggggcctgatttcacagggatggctggctga 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 654 ctgcagtggatattcactggcaactcacaggggcctgatttcatagggatggctggctga 595

                                                                       
Query: 184 cagtgtctccctaggtgggctactcctgcaccgtgtgctgcccacaagagtctagggtgc 243
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 594 cagtgtctccctaggtgggctactcctgcaccatgtgctgcccacaagagtctagggtgc 535

                                                                       
Query: 244 tgctgagactcctaggaagagtgtcttgtcccacccaacgacgtgagcatttatcctgct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgctgagactcctaggaagagtgtcttgtcccacccaacgacgtgagcatttatcctgct 475

                                                                       
Query: 304 tctactccgtggagggagcaaggaaggtgaggaccacccgtttcccccagattgtggggc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tctactccgtggagggagcaaggaaggtgaggaccacccgtttcccccagattgtggggc 415

                                                                       
Query: 364 aggaaggtggaagacatggtgagttatgcatgctgggtaaatcttaccagcacagcctag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aggaaggtggaagacatggtgagttatgcatgctgggtaaatcttaccagcacagcctag 355

                                                                       
Query: 424 gccctgagtcagggaaaagtgctgccttctgtttggtgtgagccttctgtgtccctccta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gccctgagtcagggaaaagtgctgccttctgtttggtgtgagccttctgtgtccctccta 295

                                                                       
Query: 484 gtgcggtagtctagagccctttcatggaactcctaaggcattggcaaacaagtacacagg 543
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gtgtggtagtctagagccctttcatggaactcctaaggcattggcaaacaagtacacagg 235

                                          
Query: 544 tctcccaacaggaatgagaaacaggggttaa 574
           |||||||||||||||||||||||||||||||
Sbjct: 234 tctcccaacaggaatgagaaacaggggttaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_c14.g1 MSMg01no361_c14.g1 CHROMAT_FILE:
MSMg01no361_c14.g1 PHD_FILE: MSMg01no361_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:07 2005
         (341 letters)



>mm_chr11_118436090_118436830
          Length = 741

 Score =  642 bits (332), Expect = 0.0
 Identities = 335/336 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acggaagcccttggctttccctttgactgaactatttggcatatgcccttctgcaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acggaagcccttggctttccctttgactgaactatttggcatatgcccttctgcaaatat 260

                                                                       
Query: 61  cttcatcattagcccttggctctctctcctaacaggatcaaccctcaaccaaatctgtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcatcattagcccttggctctctctcctaacaggatcaaccctcaaccaaatctgtta 320

                                                                       
Query: 121 atggaacagtcatttgcaatagcccaggcatctactaatcgcgctgctgctcgggctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggaacagtcatttgcaatagcccaggcatctactaatcgcgctgctgctcgggctggg 380

                                                                       
Query: 181 cggtaattatctccaatctctgctttctcgttaggtgggaggtcacaggaacccagtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 cggtaattatctccaatctctgctttctcgttaggtgggaggtcacaggaatccagtggg 440

                                                                       
Query: 241 ctgctgaaccctctgatgaagccgagagagagagagagagagagagagagagagagagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgctgaaccctctgatgaagccgagagagagagagagagagagagagagagagagagag 500

                                               
Query: 301 agagagagagagagagagagagagagagagagagag 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagagagagagagagagagagagagagagagagag 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 124
Number of extensions: 48
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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