BAC Information

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BAC

Clone NameMSMg01-362O24
Chromosome11 (Build37)
Map Location 15,302,506 - 15,302,910
singlet/doubletsinglet
Overlap genenone
Upstream gene1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673, LOC432537
Downstream geneLOC665660, Vstm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362O24.T7 (MSMg01no362_o24.b1)MSMg01-362O24.TJ (MSMg01no362_o24.g1)
ACCAG471502AG471503
length811872
length of high quality
(start - end)		412 (51 - 462)105 (80 - 184)
definitionCHROMAT_FILE: MSMg01no362_o24.b1 PHD_FILE: MSMg01no362_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:29 2005CHROMAT_FILE: MSMg01no362_o24.g1 PHD_FILE: MSMg01no362_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAGGAGCTGGCATTTCCTTGTTTAAAATGTGGAATGGAA
TAGAGATCCCACATCATCGGCTATGTGCACATTGCTTGTGTTACAGAAAA
TGGTCCCTCGTGACATAATATTCCATGATTAGAAGGAAAAAGACGATTGG
TTAGCTTTAGTGAAATTCCATAATCCAAAGAGCAAAACTAATAAAGACAG
GGCAGCTTTGTGCAAAGAGCCTTCCGTTAGTTTTCATCCAATGTGATTCT
TTTCTACTCGTAAAGCAGTCATATCTCCATCTCTATACAGTCTAGGATAG
GTTATAAAACAAAGTTTTACTTAACTCAAATTTTTAGAAGTTCCCAACCA
GAATACAGTGGCCCTATGTTCCTCTAATGAGTATTTTGAATGACATTGTC
AGTCATCATAGATTACAGCAAACCTGCCATTCCAGGAAGCAAAAAAGAAA
GATGTTAGATTTATAGATATTCCTTTCAGAACTAATAGAATTTTCCTTCA
GAACCTGTCCCCCAATGACCTAATGATCTCTGAAAAAGTCCCTTCTTTGT
AAAAGCTAAACTGGGCTTGGAAGCCTGTAAATCAATTGGGTTTTTAGGGG
GAACCTCCAAACCCCAAACCTTGTTTAATGGGAACAATCTTTCTTTTTAA
TCCCTGTTTTTTGTTATGGGTTTTCAACATGTGGCTACCTAACATGTGTC
CATTTTGTACTGGTCATCTTCCACACTATGTCTCTCATACATGTTCTTCT
ATTCTGTTCTG

NCCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAATGTTAACAAGCTGAAG
TGCCCAAGAGAGGATGCCTCAGACCACTTAGGAGAGAGAAGAAAGCAGTC
ACACGTTGGGAGAGAGGGAGGGAAGTGGGATGGGAAGTNNTNNNNNCNNN
NNTNNNNNNNNTNNNNTNNNNNTTNNTTTTTTTTTNNTTTTTTTTTTTTT
TNNTTTTTTTNTNNNNNNNNNNNNNNNNCCTCTTCTTTTTTTTCTCCCTN
CNCCCCTCTTTTTTTTCTCCTTTTTTTTTTTCTTTCCTTTCCCCTTTCTC
CTTTCTTTTTCCTCTTCTTTCTTCCTCTTTTTCTCTGTTTCTTTTTTCTC
TTTTTCTCTCTTTTTTTTTTTCCCCCCCCCNNCCCCTCCCCNNTTTTCCC
TTTCTTCCTTTTTTTCTCCCCTCTTTTTCTTCCCTCCCTTTTCTTCTTCC
TCTCCCTCTTTTCCCTTCTTTTTTCTTTTCTCTTTCCTTTTCTCTTTTTT
TTTTTCCCTCTCCTCCCCCCCTCTTTTCCTTTTTCTTTTCCTCTTTCTTC
CCCTCTCTCTTTTTTCTCTCTTTTTTCTTTTGCTCCCTCTTTTTTTTTCT
TCTTTTTCTCTCTTCTTTTTTTCTTTTCCTCCTTTCTTTTTCTTCCTCCC
CTTTTTGTTTTCTTCTCCCTTTCCTCCCCTTTTTTTCCTTCCCTTTTTTC
CCCCCTCTTTTTTCTTTCTCTCTTTTTTTTTCCTCCCCTCCCTTCCTTTT
CTCCGTTTGTTCCTCTCTCTCCTCTTCTCTCGCTCTTTCTGTTCCCTTTT
TCTTCTTCCTTTCCTTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_o24.b1 MSMg01no362_o24.b1 CHROMAT_FILE:
MSMg01no362_o24.b1 PHD_FILE: MSMg01no362_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:29 2005
         (412 letters)



>mm_chr11_15302300_15303110
          Length = 811

 Score =  692 bits (358), Expect = 0.0
 Identities = 394/406 (97%), Gaps = 1/406 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   attctcaggagctggcatttccttgtttaaaatgtggaatggaatagagatcccacatca 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 207 attctcaggagctggcatttccttgtttaaaatgtggaatggaatagagatccgacatca 266

                                                                       
Query: 67  tcggctatgtgcacattgcttgtgttacagaaaatggtccctcgtgacataatattccat 126
           |||| ||||||||||||| ||||||||||||||||||||||||  |||||||||||||||
Sbjct: 267 tcggttatgtgcacattggttgtgttacagaaaatggtccctcacgacataatattccat 326

                                                                       
Query: 127 gattagaaggaaaaagacgattggttagctttagtgaaattccataatccaaagagcaaa 186
           ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 327 gattagaaggaaaaagatgattggttagctttagtgaaataccataatccaaagagcaaa 386

                                                                       
Query: 187 actaataaagacagggcagctttgtgcaaagagccttccgttagttttcatccaatgtga 246
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 387 actaataaagacaggtcagctttgtgcaaagagccttccgttagtttt-atccaatgtga 445

                                                                       
Query: 247 ttcttttctactcgtaaagcagtcatatctccatctctatacagtctaggataggttata 306
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttcttttctgctcgtaaagcaatcatatctccatctctatacagtctaggataggttata 505

                                                                       
Query: 307 aaacaaagttttacttaactcaaatttttagaagttcccaaccagaatacagtggcccta 366
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 506 aaacaaagttttacttaactcaaatttttagaagttcccaaccagaatacagcggcccta 565

                                                         
Query: 367 tgttcctctaatgagtattttgaatgacattgtcagtcatcataga 412
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgttcctctaatgagtattttgaatgacattgtcagtcatcataga 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 811
Length adjustment: 9
Effective length of query: 403
Effective length of database: 802
Effective search space:   323206
Effective search space used:   323206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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