Query= MSMg01no365_b07.b1 MSMg01no365_b07.b1 CHROMAT_FILE:
MSMg01no365_b07.b1 PHD_FILE: MSMg01no365_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:29 2005
(494 letters)
>mm_chr11_80976040_80976933
Length = 894
Score = 948 bits (490), Expect = 0.0
Identities = 490/490 (100%)
Strand = Plus / Plus
Query: 5 gaattctctttacccagaatgttccccttcaccctgtccagaacctacttctgtgggttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttacccagaatgttccccttcaccctgtccagaacctacttctgtgggttc 264
Query: 65 ttcccttcctcatggtgtcttgctgatgtagttgctacactttaattgatacaccccacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcccttcctcatggtgtcttgctgatgtagttgctacactttaattgatacaccccacc 324
Query: 125 ctcccagcaacccttgcccaacacacctttattctatgcttagactttcatacccgagtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcccagcaacccttgcccaacacacctttattctatgcttagactttcatacccgagtc 384
Query: 185 ttgcttgcaagcttgctcgtggtcataaagttagtagagaaatggagccttgcacacttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgcttgcaagcttgctcgtggtcataaagttagtagagaaatggagccttgcacacttt 444
Query: 245 cctagccaatttgctctcccttacgcgtaacaaaactcttgttaaaatagttaagcataa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctagccaatttgctctcccttacgcgtaacaaaactcttgttaaaatagttaagcataa 504
Query: 305 taaccctctcagcggcaaccacccactcacgatgaaaaggcatgcggttaaaataggatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaccctctcagcggcaaccacccactcacgatgaaaaggcatgcggttaaaataggatt 564
Query: 365 taatgaaatataaaacctcaggtacaattaggtgttttattcacagctccttggctgtcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taatgaaatataaaacctcaggtacaattaggtgttttattcacagctccttggctgtcc 624
Query: 425 ccatattcttcctaatcatgaacatcttgccctggtgctcacctctgctttggggagcaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccatattcttcctaatcatgaacatcttgccctggtgctcacctctgctttggggagcaa 684
Query: 485 cagctcacca 494
||||||||||
Sbjct: 685 cagctcacca 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_b07.g1 MSMg01no365_b07.g1 CHROMAT_FILE:
MSMg01no365_b07.g1 PHD_FILE: MSMg01no365_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:29 2005
(548 letters)
>mm_chr11_81159768_81160712
Length = 945
Score = 975 bits (504), Expect = 0.0
Identities = 536/548 (97%), Gaps = 3/548 (0%)
Strand = Plus / Minus
Query: 1 ttcacagaagactcttctaccaaacaccagaaaaagatttaagatagtcagctttatatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttcacagaagactcttctaccaaacaccagaaaaagatttaagatagtcagctttatatt 686
Query: 61 gtggggttctgtgccgccccccccccaccgcacccccgccacaatgagaaataaaataaa 120
||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 685 gtggggttccgt---gcccctcccccacctcacccccgccacaatgagaaataaaataaa 629
Query: 121 aatccactatatgtagccaaggagtccgaggactccaaacaacacaggtgagggtttgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aatccactatatgtagccaaggagtccgaggactccaaacaacacaggtgagggtttgca 569
Query: 181 aacaaactgcatgagaaggaaatatattttggcacactgaaagagaagaatgtcttatta 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 568 aacaaactgcatgagaaggaaatatattttggcacacggaaagagaagaatgtcttatta 509
Query: 241 aagctgatggcggtggccctgctgcgaatgataataaaaaagatatttacattgggtttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aagctgatggcggtggccctgctgcgaatgataataaaaaagatatttacattgggtttt 449
Query: 301 gcaagatgttttgatggcgcgagtaaaccgaaagagatggaatgagcttccggtgattag 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 448 gcaagatgttttgatggcgcgagtaaaccgaaagaaatggaatgagcttccggtgattag 389
Query: 361 ggaacggtgagaaggaaaggtgtgctgggctcaagtccacagttacaacagtctctatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggaacggtgagaaggaaaggtgtgctgggctcaagtccacagttacaacagtctctatgg 329
Query: 421 gataggggcaggggcgggaagcaagacagtactgccagaagcaagcaaggtaggtgggtg 480
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 328 gatagaggcaggggcgggaagcaagacagtaccgccagaagcaagcaaggtaggtgggtg 269
Query: 481 actgagttgggtgactgagtgtttactactgttccggctttcactttgaaaacggaacct 540
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 268 actgagttgggtgactgagtgtttactattgttccggctttcattttgaaaacggaacct 209
Query: 541 aaactttc 548
||||||||
Sbjct: 208 aaactttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 945
Length adjustment: 10
Effective length of query: 538
Effective length of database: 935
Effective search space: 503030
Effective search space used: 503030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
