Query= MSMg01no366_e01.b1 MSMg01no366_e01.b1 CHROMAT_FILE:
MSMg01no366_e01.b1 PHD_FILE: MSMg01no366_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:02 2005
(628 letters)
>mm_chr11_105300466_105301493
Length = 1028
Score = 1149 bits (594), Expect = 0.0
Identities = 620/633 (97%), Gaps = 8/633 (1%)
Strand = Plus / Plus
Query: 4 ggaattcaccctactgctataggaagctgaattctgggcctcaggatggagcagcaagag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaccctactgctataggaagctgaattctgggcctcaggatggagcagcaagag 263
Query: 64 ttctcgactgctgagccatctctctagctcctaaaacagttgcctgtttaaggaaggttg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttctcgactgctgagccatctctctagctcctaaaacagttgcctgtttaaggaaggttg 323
Query: 124 taccccagaagtcatatcaacttcttccagtcctactcccctctgtagcaccccatcatg 183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 324 taccccagaagtcatatcaacttcttccagtcctactcccctctgtggcaccccatcatg 383
Query: 184 ccatgtcttgggttgatctgcatctaggctattagttacaggagaagacttttcttgcat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccatgtcttgggttgatctgcatctaggctattagttacaggagaagacttttcttgcat 443
Query: 244 ctgctatatgtgaccctctgtaaaatgcggttcccttggctcagcctgctgatcacaaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgctatatgtgaccctctgtaaaatgcggttcccttggctcagcctgctgatcacaaag 503
Query: 304 atctgactgtgtgacatcatctttctctggaatgaagcagtgggcagtagcctg-c---- 358
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 504 atctgactgtgtgacatcatctttctctggaatgaagaagtgggcagtagcctatctgta 563
Query: 359 ---ctctatctgtagtttcaacagttacctacagtcatctttggtccacaaacatgaaat 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaactctatctgtagtttcaacagttacctacagtcatctttggtccacaaacatgaaat 623
Query: 416 ggaagattccaagaataaataattcataagttttcaatcttgtaccgttctgaataacgt 475
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 624 ggaagattccaagaataaataattcataacttttcaatcttgtaccgttctgaataacgt 683
Query: 476 gataaaaatctcgcttcatcccactctttcctgccctggacatgaattgtctctttgtct 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gataaaaatctcgcttcatcccactctttcctgccctggacatgaattgtctctttgtct 743
Query: 536 agcagatgcacactctgtgtgctgcactcctgcacttcatagctgctgcatttgtcagct 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agcagatgcacactctgtgtgctgcactcctgcacttcatagctgctgcatttgtcagct 803
Query: 596 ctgctgtggctatcanaacactgctgctgagta 628
||||||||||||||| |||||||||||||||||
Sbjct: 804 ctgctgtggctatcaaaacactgctgctgagta 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_e01.g1 MSMg01no366_e01.g1 CHROMAT_FILE:
MSMg01no366_e01.g1 PHD_FILE: MSMg01no366_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:03 2005
(496 letters)
>mm_chr11_105471575_105472468
Length = 894
Score = 872 bits (451), Expect = 0.0
Identities = 482/497 (96%), Gaps = 11/497 (2%)
Strand = Plus / Minus
Query: 1 ctgtcttgacttccttcaaggataaacacgggtatggaagtgtaagccaaataaaccctt 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 797 ctgtcttgacttccttcaaggataaacacggatatggaagtgtaagccaaataaaccctt 738
Query: 61 tccttcacaacttgcttcttggtcatggtgtttgatcacagcaagagaaactctaagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tccttcacaacttgcttcttggtcatggtgtttgatcacagcaagagaaactctaagata 678
Query: 121 gatggtgtatacaattgtgaaaactcataaaactgaaactttatttatttaccttttatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gatggtgtatacaattgtgaaaactcataaaactgaaactttatttatttaccttttatt 618
Query: 181 -ctgtgtaggccatatctcagttaaaaaagaaaagaaaaaaatctatggccccaaagaga 239
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 617 cct-tgtaggccatatctcagttaaaagagaaaagaaaaaaatctatggccccaaagaga 559
Query: 240 aacatcagattataaaatgggacaggattgtagctaagccttgaggatcatgttctagaa 299
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 558 aacatcagattataaaatgggacaggattgtggctaagccttgaggatcatgttctagaa 499
Query: 300 agcaaggaagtactaaaaataatagggtatatactagaaaatccatttgagctattattc 359
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agcaaggaagtactgaaaataatagggtatatactagaaaatccatttgagctattattc 439
Query: 360 cttttttttaaattttgttttggttttttgttttttgtttttcgagacagggtttctctg 419
||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 438 ctttttttt--attttgttttg-------gttttttgtttttcgagacagggtttctctg 388
Query: 420 tatagccctggctgtcctggaactcactcggtagaccaggctggcctcgaactcagaaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tatagccctggctgtcctggaactcactcggtagaccaggctggcctcgaactcagaaat 328
Query: 480 ccacctgcctctgcctc 496
|||||||||||||||||
Sbjct: 327 ccacctgcctctgcctc 311
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 894
Length adjustment: 10
Effective length of query: 486
Effective length of database: 884
Effective search space: 429624
Effective search space used: 429624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
