BAC Information

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BAC

Clone NameMSMg01-366J11
Chromosome11 (Build37)
Map Location 89,591,776 - 89,592,023
singlet/doubletsinglet
Overlap genenone
Upstream geneAkap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366J11.T7 (MSMg01no366_j11.b1)MSMg01-366J11.TJ (MSMg01no366_j11.g1)
ACCAG474268AG474269
length775765
length of high quality
(start - end)
249 (77 - 325)242 (82 - 323)
definitionCHROMAT_FILE: MSMg01no366_j11.b1 PHD_FILE: MSMg01no366_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:29 2005CHROMAT_FILE: MSMg01no366_j11.g1 PHD_FILE: MSMg01no366_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAATC
CGCGGAATTCCAAACTATTTCGCAATTCATCTCCTATGTGTATTTCCACT
GGAAATAAAATTGCATAGCTTCCAAAGCATGCACTTCAGCCCTCGTTGGA
GAAGTACACCCAGTAGTAAGCTCAGTAGTCAGAAAGCGCAGGCTGGGCCA
GTTTTGGTTGCTTGGGCAGCTGTGTGATCTTAGGCAAGGTCATTTCTCTC
TAGGTTTGTTGTTGTTGTTGTTTTGTTTGTTTGTTTGTTTGTTTGTTTTT
CGAGACAGGGTTTCTCTGTATAGCTGGTCTGTCCTGGAACTCACTTTGNA
GACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTCTCCCGAGT
GCTGGGATTAAAGGTGTGCGCCACCACACCCGGCTTGTTTGTTTGTTTGT
TTTTAATCAACATAATGAACCTTTCTTATTTCAATGGCCTCCGGATCACT
TTCTGCTCTCTATAACGTGCTACAGATAAGACCCCTATTATTTTTTTTCT
CCCCGGGGCCAACTGGTATTATTTATAGGTTTTTGCTAACTATCTCCCTT
CTCTGTTTTTTCCCTTCTTTTTCTTTTATTTTTCCCCTATTTTCAACAAT
TTCCGTTCGTCTCTTTTTTTATTTTCAGAGATCCTATAACCCTTCCCCCC
TTCCTTACTCCCATTTTTTTTTTACCCTATTCTCCTTTTCCTCCCTTACT
ATCCCTTCTTACACCTTACCTTTTG
NNNCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCCGAAAAATTCTCACCCGAGGAATACCGAAT
GGCAGAGAAGCACTTGAAAAAATGTTTACCATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACTTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACTCTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTTAGATAANTGGACATAGNACTACCAGAG
GATCCAGCAATACCTCTCCTGGGCATGTATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACCACGCTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCCAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACCCATTCTCAAAGGAACTCCCACATATTTACTCAACGA
AAGCGGTTTTTTTTTTTCATCCTCAGGAAACCCAAAATATAATAACTATT
CCCCCACCCTCTTGGTACCCTCCAAAAAAGAATATCTGGATTTGTGCCAC
CAATTCCCCTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_j11.b1 MSMg01no366_j11.b1 CHROMAT_FILE:
MSMg01no366_j11.b1 PHD_FILE: MSMg01no366_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:29 2005
         (249 letters)



>mm_chr11_89591576_89592224
          Length = 649

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatctcctatgtgtatttccactggaaataaaattgcatagcttccaaagcatgcactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatctcctatgtgtatttccactggaaataaaattgcatagcttccaaagcatgcactt 260

                                                                       
Query: 61  cagccctcgttggagaagtacacccagtagtaagctcagtagtcagaaagcgcaggctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagccctcgttggagaagtacacccagtagtaagctcagtagtcagaaagcgcaggctgg 320

                                                                       
Query: 121 gccagttttggttgcttgggcagctgtgtgatcttaggcaaggtcatttctctctaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccagttttggttgcttgggcagctgtgtgatcttaggcaaggtcatttctctctaggtt 380

                                                                       
Query: 181 tgttgttgttgttgttttgtttgtttgtttgtttgtttgtttttcgagacagggtttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttgttgttgttgttttgtttgtttgtttgtttgtttgtttttcgagacagggtttctc 440

                   
Query: 241 tgtatagc 248
           ||||||||
Sbjct: 441 tgtatagc 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)