Query= MSMg01no366_l16.b1 MSMg01no366_l16.b1 CHROMAT_FILE:
MSMg01no366_l16.b1 PHD_FILE: MSMg01no366_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:39 2005
(503 letters)
>mm_chr11_38983316_38984212
Length = 897
Score = 588 bits (304), Expect = e-172
Identities = 399/482 (82%), Gaps = 81/482 (16%)
Strand = Plus / Plus
Query: 22 ctcatttttcatgaatgaatcagatcttttcatcaaaatgtggatattactgttacaata 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ctcatttttcatgaatgaatcagatcttttcatcaaaatgtggatattactgttacaata 281
Query: 82 ttttgtatttagggtcataaccttcttatctacatgtattgattatacttgtttataaac 141
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttttgtacttagggtcataaccttcttatctacatgtattgattatacttgtttataaac 341
Query: 142 actgatagcttgccatgtttttcatcattttctacacacacacacacgtttgtatacata 201
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 342 actgatagcttgccatgtttttcatcattttctacacacac------gtttgtatacata 395
Query: 202 tacgcattcatgtttactactgctttctggatatcactgtaaattttatttctcctcata 261
||||||||||||||||||||| ||| |||
Sbjct: 396 tacgcattcatgtttactact--------------act----att--------------- 422
Query: 262 tcttacagttatatatgtatttaagcaatagtaatttcatttaattttgtattttgcatt 321
||||||||||||||||||
Sbjct: 423 ------------------------------------------aattttgtattttgcatt 440
Query: 322 ttaaattattccaatatattttatataatactgtagctataaatatatcgtaaaggtatt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaattattccaatatattttatataatactgtagctataaatatatcgtaaaggtatt 500
Query: 382 tttaagagtgaatatgttttttacctctcctaacatacccttattctgtaattatctaca 441
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaagagtgaatatattttttacctctcctaacatacccttattctgtaattatctaca 560
Query: 442 ttataatcatctcatgttattgtttgctcaataaaaattatatttcacatgtaggtatta 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttataatcatctcatgttattgtttgctcaataaaaattatatttcacatgtaggtatta 620
Query: 502 aa 503
||
Sbjct: 621 aa 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 897
Length adjustment: 10
Effective length of query: 493
Effective length of database: 887
Effective search space: 437291
Effective search space used: 437291
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_l16.g1 MSMg01no366_l16.g1 CHROMAT_FILE:
MSMg01no366_l16.g1 PHD_FILE: MSMg01no366_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:39 2005
(502 letters)
>mm_chr11_39136697_39137598
Length = 902
Score = 963 bits (498), Expect = 0.0
Identities = 501/502 (99%)
Strand = Plus / Minus
Query: 1 actctgctttgatactctagccagttgctaacaagcaaaccatttcttgacacatgtaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 actctgctttgatactctagccagttgctaacaagcaaaccatttcttgacacatgtaaa 643
Query: 61 attgcacagacttgtaatacctcaggcacaatgtgctctttaacactgttattaatatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 attgcacagacttgtaatacctcaggcacaatgtgctctttaacactgttattaatatgt 583
Query: 121 taacaggtggaaacttattatcatccaactgcttggagtgtgaaatttcttatactcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 taacaggtggaaacttattatcatccaactgcttggagtgtgaaatttcttatactcatt 523
Query: 181 tcattttcaattctttgtagtttatggttccacttgattaaaggtgggactgtgaacatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tcattttcaattctttgtagtttatggttccacttgattaaaggtgggactgtgaacatt 463
Query: 241 tcaagttgttttaattcaagataaaaatgctgaggattgtgttcagaaatatattagcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcaagttgttttaattcaagataaaaatgctgaggattgtgttcagaaatatattagcta 403
Query: 301 ttgattccgatgtacgcttagcacttatgctatctgaattcacatgaaaatatatgtgaa 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttgattcccatgtacgcttagcacttatgctatctgaattcacatgaaaatatatgtgaa 343
Query: 361 aggtaattggaattgtgaccaaactatcatcaaaattaacaaaaggaaggaggtaaaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aggtaattggaattgtgaccaaactatcatcaaaattaacaaaaggaaggaggtaaaaga 283
Query: 421 gttaaggatcattagtcgaaaattaatacaacttgctatactgataaaatatgtttttat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gttaaggatcattagtcgaaaattaatacaacttgctatactgataaaatatgtttttat 223
Query: 481 tcacagaatttataataaatgg 502
||||||||||||||||||||||
Sbjct: 222 tcacagaatttataataaatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
