BAC Information

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BAC

Clone NameMSMg01-366M07
Chromosome11 (Build37)
Map Location 60,020,313 - 60,141,761
singlet/doubletdoublet
Overlap geneSrebf1, Tom1l2
Upstream gene2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1
Downstream geneLOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366M07.T7 (MSMg01no366_m07.b1)MSMg01-366M07.TJ (MSMg01no366_m07.g1)
ACCAG474402AG474403
length762771
length of high quality
(start - end)
244 (82 - 325)413 (80 - 492)
definitionCHROMAT_FILE: MSMg01no366_m07.b1 PHD_FILE: MSMg01no366_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:42 2005CHROMAT_FILE: MSMg01no366_m07.g1 PHD_FILE: MSMg01no366_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,020,313 - 60,020,556)(60,141,352 - 60,141,761)
sequence
TTTTTTTTCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTCTGTTTCCGACAAGCGGCCACTCTTCTTCCATCAC
TCGCTCACCTGAGAAGCCTGAAGGCAGGCTCGAGTAACCCAGCACGGGAG
CAGGGCTGAGCTGTACGGGTGGTGCGGGGAAGCTCGGAGGCAGGAGGGTC
CCCGGTGACGGCTGTGGCGCTGCAGGCTGTAGGATGGTGAGTGGCACTGG
CTCCTCTTTGATCCCAGGCCCAGGGGAAAAGGGGGACACGGACGGGTACA
TCTTTAAAGCAGCGGGTGCCGATGGTGTTTTTTACAAGGGTGCAGGTGTC
ACCTTGGGTCCTCCCAGGAAGGCTTCCAGAGAGGAGGCCAGAGAAGCAGA
AGAGAAGCTCTCAGGAGAGTTGGCCCCCGCCCTGCTGGGGCCTGTGTCCC
CTGTCTCACCCCCAGTATAGGGGGCGTCATACAGGCCCGGTAAGTCACTG
TCTTGGTTGCTGATGATCTGGAGTATGTCTGTTTTAGTAGACGATTTTAT
GTTTTGCGCGGCATTTGGTTATGGTTTTCTTCTTCCATTCCTGCTTGTTT
GGTATGTGTTGTCGTGCATTTTCTTGGCGTCTCCAATTTAGTTCTCCCCC
GTCCTCTTTCCCTTTTTTTTTTTCCCGCCCGCGCCTTCTCTTCCTGGTTA
TTTTTTTTTCCCTCTTTTTTCTCCGTTCCTTCGCTTTTTTATCCTCTTTA
TTTTTTTTTCCC
CTTTCTCGATTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATGCTTCATGCTTCCTTTA
ATTAGGGTCAGGACAGAGGCAGGATGCTGTTCTCTAACCCTGAGTTAAAA
GGAAAAGCTGGGTGTGTGAGGTGACTGCAGTCTGTTGAGGGGCACTGTTC
ATTGACTTGCAGCGCTTCAAGGCAGGTTTCACATGGGTCTGAGTTATGTG
AATAGGTCTCCCAGAAAGTAGGTGACAGTCAGAGAACAGACATGAGTCCA
CATCTGCCCATGCTGAAGACAGTTCTTTGTTCAGTAGGGCTCCGGGATCT
GGAGACTCCATCTACTATGGTTTGCATACAGTTGTCACATGCCCCCCAAG
GCTTCATAGGCTAATATTCGCCCCCTACTCCGAGGTATTAAGCTAGTGGA
AACTTATTCTAATGGTTGTTTAGAAGGGGTGCCTTTGGGGGTATTTAGGG
TTAGGTAAGTTGTATCCCCCTTTATTGATACCTTTTTCCGCCCTTAATCA
TCCGCTTTTTTCCTTTCCCCTTTATATTTATAATTCTTAGATTGTTATTT
TTCTTTTTTCTTTTCCTTTTATTATTTTTAAATAAACTCTCATGCGGTAC
TTTTGTTCTATTTTTTTTTTATTATTTCCGTTCTTTCCCCCCCCCCCTCC
CCCTCATTTTTTTTATTTTTATCACCAACCTAACTAGACTTTTATTTTTT
TTTTTCTCTTCCCTATTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_m07.b1 MSMg01no366_m07.b1 CHROMAT_FILE:
MSMg01no366_m07.b1 PHD_FILE: MSMg01no366_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:42 2005
         (244 letters)



>mm_chr11_60020113_60020756
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccactcttcttccatcactcgctcacctgagaagcctgaaggcaggctcgagtaaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccactcttcttccatcactcgctcacctgagaagcctgaaggcaggctcgagtaaccca 260

                                                                       
Query: 61  gcacgggagcagggctgagctgtacgggtggtgcggggaagctcggaggcaggagggtcc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacgggcgcagggctgagctgtacgggtggtgcggggaagctcggaggcaggagggtcc 320

                                                                       
Query: 121 ccggtgacggctgtggcgctgcaggctgtaggatggtgagtggcactggctcctctttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccggtgacggctgtggcgctgcaggctgtaggatggtgagtggcactggctcctctttga 380

                                                                       
Query: 181 tcccaggcccaggggaaaagggggacacggacgggtacatctttaaagcagcgggtgccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccaggcccaggggaaaagggggacacggacgggtacatctttaaagcagcgggtgccg 440

               
Query: 241 atgg 244
           ||||
Sbjct: 441 atgg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no366_m07.g1 MSMg01no366_m07.g1 CHROMAT_FILE:
MSMg01no366_m07.g1 PHD_FILE: MSMg01no366_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:42 2005
         (413 letters)



>mm_chr11_60141152_60141964
          Length = 813

 Score =  692 bits (358), Expect = 0.0
 Identities = 397/410 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgcttcatgcttcctttaattagggtcaggacagaggcaggatgctgttctctaacc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 610 acatgctttatgcttcctttaattagggtcaggacagaggcaggatgctgttctctaaca 551

                                                                       
Query: 61  ctgagttaaaaggaaaagctgggtgtgtgaggtgactgcagtctgttgaggggcactgtt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 550 atgagttaaaaggaaaagctgggtgtgtgaggtgactgcagtctgttgaggggcgctgtt 491

                                                                       
Query: 121 cattgacttgcagcgcttcaaggcaggtttcacatgggtctgagttatgtgaataggtct 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 490 cattgacttgcagcgcttcaaggcaggtttcaaatgggtctgagttatgtgaataggtct 431

                                                                       
Query: 181 cccagaaagtaggtgacagtcagagaacagacatgagtccacatctgcccatgctgaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 430 cccagaaagtaggtgacagtcagagaacagacatgagtccacatctgcctatgctgaaga 371

                                                                       
Query: 241 cagttctttgttcagtagggctccgggatctggagactccatctactatggtttgcatac 300
           |||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cagtaccttgctcagtagggctccgggatctggagactccatctactatggtttgcatac 311

                                                                       
Query: 301 agttgtcacatgccccccaaggcttcataggctaatattcgccccctactccgaggtatt 360
           ||||||||||||||||||||||||||| |||||||||||||  ||||| |||||||||||
Sbjct: 310 agttgtcacatgccccccaaggcttcacaggctaatattcggtccctattccgaggtatt 251

                                                             
Query: 361 aagctagtggaaacttattctaatggttgtttagaaggggtgcctttggg 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aagctagtggaaacttattctaatggttgtttagaaggggtgcctttggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)