BAC Information

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BAC

Clone NameMSMg01-367C13
Chromosome11 (Build37)
Map Location 121,663,101 - 121,663,610
singlet/doubletsinglet
Overlap genenone
Upstream geneFasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl
Downstream genePtchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367C13.T7 (MSMg01no367_c13.b1)MSMg01-367C13.TJ (MSMg01no367_c13.g1)
ACCAG474698AG474699
length729756
length of high quality
(start - end)		522 (14 - 535)506 (81 - 586)
definitionCHROMAT_FILE: MSMg01no367_c13.b1 PHD_FILE: MSMg01no367_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:14 2005CHROMAT_FILE: MSMg01no367_c13.g1 PHD_FILE: MSMg01no367_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATTCGGAGAGGATCCGCGGAATTCCCAAAGAATCAATGAAAATA
TTATGCTGGGAAAAAAAAGTTAGAGGCAGGAACTCTCCAGAAGGCATAAA
CTTACCCCTACTCATTCCAATGTGTTGCGTATACCACCACTCTCAGCTCA
CTGGGTGCAGAAAGGGAAGGGAGAGATGACACTGCTGTTATAGGAAGGCT
GACCCCCAAAGGGAAGAGAGTCTTGGGTGTGGGGGTCTAGCCTGGAATGG
ATGCGGTGGGAGACCCTGAAACATTAGAAGTGAGTTGGATGAGGTGTGGG
CAACTGCTTCTTGAAGAGTGCTGCAGCCATACAGCATCCCAGGCCCAGTC
ACCAGCCTGTGTCTCCAGTAGGCTGACAGGACTCCTTGAAGTTTAGGGGA
GGTTGCCTCACCAAACTCTCTGTCCACATCTCCTAGGGCAGTCAGACAAG
GACCTGCAGTCTAAGATGGCACCCCTGTATCATATACTACCACTACCCTC
CTCACCAAGTCCCCCAAGGCCCTGGTTTCTCTGGAAAGGAAAGTGCTTTT
CAGGTCTTCATGTCACACAGCCTCTGCACGGGTGTCATTCTATAGAACTG
GTGTGATCTTCAGACCCCTGAGAAGCTTCCATTTTGCTTCCCCCGGGCCA
TTTGTTTCCTTTTCAGCCCTTTTGCCCTAAAAAGTTTTTCAAGTTTGGTT
AGGTGGAAATGGGAAGTTCTCTTTTTTTN

NNNCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATAATCATGTGTTTCTAC
TTGTTTGACACACTGAATACAACTGTGTTCTACTGTTTGTGATCTTAAAC
CAATCTAAGATATACTATTAAAAGTAATGTATGGACTTTCCCCTTGAGAG
GTGATTTATGAGAATAAAAATCCTGTAAACATACTAACATCTAAAAAATA
GTTAAGCTTAATTTATGTAAATGTGGCAAAAATCCTCCAGGACACTTTTA
GGAATCATTTTCTTCCATTTATATGTATAATTAAAAGAGTCATGAGTTAA
GGGTAATTTACTCTGTTTTTAAAACAATGTATTTCATGTGTGAGTGTGTG
GGAGAGATGCATTTGTGGGTCCTTGTCTGCTGTGCTGCATAGAACATCTA
GTCAACAGGACCCCAGGCTTGCACACACTCTGCACTTACCTAGTCCCAGC
CAACTGACTTTCTCAAGCTTAAGTGAAAAAAAGTAGTGCATAACAAACAT
AACAAATGTGCCTTTAAGATAAATGAGGAGACTTCATATATAATCACAGT
ACAGAAAAAGAATGATGAAAGCCTCTATAGGATTTACAGTTGAGTGAAAG
GAGCTCATAAGCTTTCTATGTAAATAAATTCCTATGCCAAATATAATGAC
CCTGAAATTGGGTCTTAAACATGTGCCTAAATTTCCTACCCCCAAGGGCT
ATGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_c13.b1 MSMg01no367_c13.b1 CHROMAT_FILE:
MSMg01no367_c13.b1 PHD_FILE: MSMg01no367_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:14 2005
         (522 letters)



>mm_chr11_121662891_121663810
          Length = 920

 Score =  913 bits (472), Expect = 0.0
 Identities = 502/512 (98%), Gaps = 2/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggaattcccaaagaatcaatgaaaatattatgctgggaaaaaaaagttagaggcaggaac 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ggaattcccaaagaatcaatgaaaatattatgctgggaaaaaaaagttagaggcaggaac 270

                                                                       
Query: 71  tctccagaaggcataaacttacccctactcattccaatgtgttgcgtataccaccactct 130
           ||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 271 tctccggaaggcataaact-acccctactcattccaatgtgttgcatataccaccaccct 329

                                                                       
Query: 131 cagctcactgggtgcagaaagggaagggagagatgacactgctgttataggaaggctgac 190
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 330 cagctcactgggtgcagaaagggaagggagagatgacactgctgt-ataggaaggctgac 388

                                                                       
Query: 191 ccccaaagggaagagagtcttgggtgtgggggtctagcctggaatggatgcggtgggaga 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ccccaaagggaagagagtcttgggtgtgggggtctagcctggaatggatgcggtgggaga 448

                                                                       
Query: 251 ccctgaaacattagaagtgagttggatgaggtgtgggcaactgcttcttgaagagtgctg 310
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 449 ccctgaaacattagaagtgagttggatggggtgtgggcaactgcttcttgaaaagtgctg 508

                                                                       
Query: 311 cagccatacagcatcccaggcccagtcaccagcctgtgtctccagtaggctgacaggact 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 509 cagccatacagcatcccaggcccagtcaccagcctgtgtctccagtaggctgataggact 568

                                                                       
Query: 371 ccttgaagtttaggggaggttgcctcaccaaactctctgtccacatctcctagggcagtc 430
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ccttgaagtttagggaaggtcgcctcaccaaactctctgtccacatctcctagggcagtc 628

                                                                       
Query: 431 agacaaggacctgcagtctaagatggcacccctgtatcatatactaccactaccctcctc 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agacaaggacctgcagtctaagatggcacccctgtatcatatactaccactaccctcctc 688

                                           
Query: 491 accaagtcccccaaggccctggtttctctgga 522
           ||||||||||||||||||||||||||||||||
Sbjct: 689 accaagtcccccaaggccctggtttctctgga 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 920
Length adjustment: 10
Effective length of query: 512
Effective length of database: 910
Effective search space:   465920
Effective search space used:   465920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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