BAC Information

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BAC

Clone NameMSMg01-367E10
Chromosome11 (Build37)
Map Location 64,750,264 - 64,750,735
singlet/doubletsinglet
Overlap genenone
Upstream geneCox10, 2810001G20Rik, EG544785, Hs3st3a1, LOC626959
Downstream geneElac2, AU040829, 1700086D15Rik, LOC100041790, Myocd, Map2k4, Zkscan6, Dnahc9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367E10.T7 (MSMg01no367_e10.b1)MSMg01-367E10.TJ (MSMg01no367_e10.g1)
ACCAG474788AG474789
length772754
length of high quality
(start - end)
542 (49 - 590)472 (59 - 530)
definitionCHROMAT_FILE: MSMg01no367_e10.b1 PHD_FILE: MSMg01no367_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:23 2005CHROMAT_FILE: MSMg01no367_e10.g1 PHD_FILE: MSMg01no367_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTACATTTTTAGGCAAATGGATGGAACTGGAAATATCATTC
TGAGTGAGGTAACCCAATCACAAAAGAATACATATAGTATATACTCACTA
ATAAGTGGATAGTAGCCCAGAAGCTCGGAATACCCAAGATACAATTCACG
TACCACATGAAGCTCAAGAAGAAGGAAGACCTAAGTATGAATACTTCAGT
CCTTCTTAGAAGAGGGATCAAAATACCCATCGGAGGGGATACAGAGACAA
GGTATGGTACTGAGACTGAGGGTTGGGGGCTTTAGAGACTGCCCCACCTG
GGGATCCATCCCATGTACAGTTACCAAACCCAGACACTATTGTGGATGCC
AACAAGTGCTTGCTGACAGAAACCTGATATGGCTGTCTCCTGAGGGGCTC
TGCCAGTGCCTGACAAGTGCAGAGGTGAATGCTCATGGCCAGCCAATGGG
CTGAGCACTGGATCCCCAATGGAGGAGCTAGAGAAAGAACCTAAGGAGCT
GAGAGGGTTTGCAGCCCCATGGGAGGAACAGCAATATAGACCAACCAGTA
GCCCCAGAGCTCCCAGGGAATAACCCACAACCAAAGAGTACACATGGAAT
CCATGGCTCCATCTGCATATGTAACAGAAGATGGGCTTGTCAGTCCTCCA
TGGGAAGAGAAGCCCTTGGTCCTGTTGAAGCTTGAGGCCCCCCGGTAGGG
GAATGCCCGACAGGGAATGGGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAAGGCAAGGGAAGTGGAGGGAGGGTTTGGATAATTACCATGT
GAGTGTGATTAATGCTTCCATCTGGGCAAAGCGTTTTATACCAAAGAAAT
CTCTCAAAGATTCCATTGTTGCCATCTTGCCTTCTAAGATTGACTAGTTT
AATCTTCATTTTATAGACAGAAATTCTTGACCATGGGCCTGGCAGAAGTG
TAGGGCTGACCCTGGTTTTGGTCATCTGAAACTTTGGCCTGCTTGCCTGG
GATTCTTGGAGATGTTTGGAATGGACCCAGTGAGGCACAGTGAGAGTGAG
AGAGGGTAACCTTACCTGTGGGCTGGATGATGACAACCATCTTGCTAATG
CTGGGGCTAGTTCTGGAATCCAAGGCTCTCTTTTGGGCGTTGATCAGGTA
TCCTCTGCCGTGCCTTCGATGGCTTTGCAAACACTTCCAAAGTGGTCTTG
TCTTAGTTACTACTGTAACCTTTTTCCTTGAGGCAAAGCCTTGCTGTATT
GGCTAGGCTAGCCTTGAACTCCTGGGCTCNAGCAGATCTCCTGTCTCAGC
CTCTCAAGAAGCCAGGACTACAGACTACAGGTATATGTATATGTATGTGT
GGGGGGGGGGGTGTCCCCCCCCCCTCTCTTTCTTTCTCTTTTATATATCC
TCGCTCTTTTCATTTTCGCTTTCCTCTGGTTCCGTTATTACTTCTGATTT
CTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_e10.g1 MSMg01no367_e10.g1 CHROMAT_FILE:
MSMg01no367_e10.g1 PHD_FILE: MSMg01no367_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:23 2005
         (472 letters)



>mm_chr11_64750064_64750935
          Length = 872

 Score =  822 bits (425), Expect = 0.0
 Identities = 461/473 (97%), Gaps = 2/473 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggcaagggaagtggagggagggtttggataattaccatgtgagtgtgattaatgcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aaggcaagggaagtggagggagggtttggataattaccatgtgagtgtgattaatgcttc 613

                                                                       
Query: 61  catctgggcaaagcgttttataccaaagaaatctctcaaagattccattgttgccatctt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 catctgggcaaagcattttataccaaagaaatctctcaaagattccattgttgccatctt 553

                                                                       
Query: 121 gccttctaagattgactagtttaatcttcattttatagacagaaattcttgaccatgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gccttctaagattgactagtttaatcttcattttatagacagaaattcttgaccatgggc 493

                                                                       
Query: 181 ctggcagaagtgtagggctgaccctggttttggtcatctgaaactttggcctgcttgcct 240
           || | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 492 ctcgaagaagtgtagggctgaccctggttttggtcatctaaaactttggcctgcttgcct 433

                                                                       
Query: 241 gggattcttggagatgtttggaatggacccagtgaggcacagtgagagtgagagagggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gggattcttggagatgtttggaatggacccagtgaggcacagtgagagtgagagagggta 373

                                                                       
Query: 301 accttacctgtgggctggatgatgacaacca-tcttgctaatgctggggctagttctgga 359
           |||||||||| |||||||||||||||||||| | |||||||||||||||| |||||||||
Sbjct: 372 accttacctgcgggctggatgatgacaaccact-ttgctaatgctggggccagttctgga 314

                                                                       
Query: 360 atccaaggctctcttttgggcgttgatcaggtatcctctgccgtgccttcgatggctttg 419
           |||  |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atcggaggctctcctttgggcattgatcaggtatcctctgccgtgccttcgatggctttg 254

                                                                
Query: 420 caaacacttccaaagtggtcttgtcttagttactactgtaacctttttccttg 472
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 caaacacttccaaagtggtcttgtcttagttactactgtaacctttttccttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)