BAC Information

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BAC

Clone NameMSMg01-367J12
Chromosome11 (Build37)
Map Location 71,221,831 - 71,222,049
singlet/doubletsinglet
Overlap genenone
Upstream genePelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249
Downstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367J12.T7 (MSMg01no367_j12.b1)MSMg01-367J12.TJ (MSMg01no367_j12.g1)
ACCAG475025AG475026
length783857
length of high quality
(start - end)
219 (82 - 300)---
definitionCHROMAT_FILE: MSMg01no367_j12.b1 PHD_FILE: MSMg01no367_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:48 2005CHROMAT_FILE: MSMg01no367_j12.g1 PHD_FILE: MSMg01no367_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAACCATAAATTTTTGTTCGCCCCTTGATCACTTTCCCAAGAGGATCC
GCGTAATTCATCTTTCCTTCCCACTCCCCAGGCAACTGCCAGGGACTTTT
TGAGGGGGACCTTCCCTGTAGAGTATACCCTAGAAAGATGCTTCATCTCC
TGACAGGTGCCTCACTTCTGTGAGGCCAGAGCTGGGCATGATGCTCTGAG
CTGCCCTGGGCTGGGTTCACTGTGCTGTGATGCTTGAAAGATCCTAATTT
TCTTTTTAAAAGACCATGCATTCTACAAAAGGGTATATTAGTACACAGCA
GACATGAGGCAATTGTCCAGTTAACTAGGACAGAGTGTCTCTCATGGCCT
GGCTTGCTCTACCTGATTCGTGGTTTTAGAACATGTTCTACTATCTGCTT
TTATTTCCACTATGACAATTCTCGGCTCTGGTGTTCTCTTCTACGTGTTA
CGCTTTGCTTATCACAGATAACTCCTTACTTGTTCCTTCCTGACCTTCTT
GTCATGACCTATGTAGCCTTTTCCTACCCACCTCTTTCCCATCATTTTAC
CTCATTTTGCCTTTATCTCTTGTCCTCTATCCCTTTTATTCATTTTTCTA
CTGCTTTCTTTCCATCCCCGCCCCTCTCCTTTCCCTCTTTTCCCGTCCTT
CCTGTCCCTTCGTATCATTCTGCCCTTCCCCGTATTTACCTTCTTTCCAC
CCTTTCCTTTCACTCCCTTTTCTTTCCATTCCCCTCTCCTCCCATTCCAC
TTTCTCCCTTCTTCATTCCCACCTCTTTTTCTT
TTTTTTTTTTCTCCNNCNCNCCCCTTTCTCCCTTCCTTATAGAAGATTCT
TTTCAAATGAAATGGTTAATCCTGGCGGTCGTCTTTCAGAACAAATTTAG
GTGACACTATATTTTCCCCCGCGGAATTCTCACCTGAGGAATACGGAATG
GCTGAGAAGCACCTGAAAAAAATGTTCAGCATCCTTAATCATCAGGGAAT
TGGAAATCAAAACAACCCTGAGATTCCACCTCACACCAGCCAGAATGGCT
AAGATAAAAAATTCAGGTGACAGAAGATGCTGGCTAGGATGCGGATAAAG
AGGAATACTCCTCCATTGCTGGTGGGATTACAAGCTTGTACAACCACTCT
GGAAATCAGTCTGGTATTTTCTTTTAAAATTGGCCATGTACTACCGGTAG
ATCCCACAATACCTCTCCTGGGTATATATTCAGAAGATGCCTCTATTTGG
TAATAATGATACATGTTCCACTATGTTCATAGCAATCCTAATTTATAATC
AACCATATATCTGTTTAATATCCTCCTATGCCTCCTCCACAGGCAACAAT
TGCACTATCGAACTATGTTGCTACCCTTCACCTCGATGGCCGTTACTATC
TCTTTCTTTTTACTTAACAGCGAAACTTTACAGTAATCTCGTCATTAGCA
ACCGGGTTGGGACCTCGTGCGTTTCTCCCTTTTTTCATACTTATGTTAAT
CCCCTCTAACACCAAGATATTCCTTATTGTAATTGCAACTTATACTCGCA
CAGGTTGTCTTGCTAATTTTTCAGACTTACTCTACACCCTACCCTTTTTA
TTTCGTCAACTTCTTTTTAGTTTTTTACCCTGTCGCAACTTCCGTATCTA
CAATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_j12.b1 MSMg01no367_j12.b1 CHROMAT_FILE:
MSMg01no367_j12.b1 PHD_FILE: MSMg01no367_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:48 2005
         (219 letters)



>mm_chr11_71221631_71222249
          Length = 619

 Score =  393 bits (203), Expect = e-114
 Identities = 215/219 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaactgccagggactttttgagggggaccttccctgtagagtataccctagaaagatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gcaactgccagggactttttgagggggaccttccctgtagagtataccctagaaagatgc 360

                                                                       
Query: 61  ttcatctcctgacaggtgcctcacttctgtgaggccagagctgggcatgatgctctgagc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 359 ttcatctcctgacaggtgcctcacctctgtgaggccagagctgggcatgatgctctgagc 300

                                                                       
Query: 121 tgccctgggctgggttcactgtgctgtgatgcttgaaagatcctaattttctttttaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgccctgggctgggttcactgtgctgtgatgcttgaaagatcctaattttctttttaaaa 240

                                                  
Query: 181 gaccatgcattctacaaaagggtatattagtacacagca 219
           |||||||||||||||||||||  ||| ||||||||||||
Sbjct: 239 gaccatgcattctacaaaaggacataatagtacacagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)