BAC Information

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BAC

Clone NameMSMg01-368O08
Chromosome11 (Build37)
Map Location 77,890,346 - 77,890,587
singlet/doubletsinglet
Overlap geneEral1
Upstream geneCcdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2
Downstream geneBC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368O08.T7 (MSMg01no368_o08.b1)MSMg01-368O08.TJ (MSMg01no368_o08.g1)
ACCAG476013AG476014
length775754
length of high quality
(start - end)
242 (71 - 312)244 (67 - 310)
definitionCHROMAT_FILE: MSMg01no368_o08.b1 PHD_FILE: MSMg01no368_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:28 2005CHROMAT_FILE: MSMg01no368_o08.g1 PHD_FILE: MSMg01no368_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCACACGGAGTCCGCGGAA
TCTCTATTTTCCCAAAAAAGACTTGAACTCATAAGAGATCCACCTGCCTC
TGCCTCCCAAGTGCTGGGATTAAAGACATGCATAAACATACATAGTTAGA
GAATGGCTGTCTTTGATATCAGCATCCTGCCTTTCCTTCATGGGCAAACT
GTTAACTGATCTTAGATCTCTTATCCTTCGGTACGATTTCAATGCTAATG
TGACCCCAAGGTAAGAGGGTGACCATGAATAAATGAAAGATTAATGCTGG
AGATGCGGCTCATGTGTTTTTTTTTGCTTGGGTAGCACTCAAGAGCCCAG
GGTTAGCTCCCCAGCACTACACTAAAGAAATCACACAAAACCAGAGTTCA
GTGTTGAATTGCCCCACCCACCCAGGTGTGGTATCACACTCCTAAAATCC
CAGCTCAAAGAACTCAATAGCCAGGCAGTGGTGGCACATGTCTTATACCT
CTAATCTCTTCACTTGCAAGGTTAAGGCACGTGTACTTCTGAGCTTTAGG
CTCTACCGTCCAATAAACAGATTTTTCTTTATGCTATGCCTAAATACTAT
AAAACAAGGTCTCACTTATTAAATACTTTCACTTTTTCAACTTTTATTAT
TTCATTGGCATCACACTTTTTTTCTTTATTATTCCCTCACACTTTTTCTT
TGGTTAATCTCTCCTTTTATTTCATATATCATCTATAACACTTCATTTTC
ATCTTTTTTTATTTTCTCCTGATTN
GGGAGGCCAGGAGGACGCCTGTTTTCAACAGAGTAGGNNGAACTATAGAA
GGTTCAGCAAAATGCAAGTCAGCCTGGGGCAAAGCAAGTTCCAGGTCCAG
GCGTGGTGGTACACACCTTTAATCTGGGCCACGTTGTCTGCTGGAGGCCT
AAATAAGGACAATGGAAGAAGGGAAAGGCTTTGCAGCTTTACACTCACTT
GCCAGGACATCTGGACCCTACTTACTTCTTCAGGATTCCAGCTTATACAG
AAGACCAGCTGAAACAACTAGCCTGGTGGGACTGAGCAACTGCTAGATAT
TGGGACTTCTTTTTTTCAGCTGCCCATTGTTGGGTTAGTTGGACAGCATA
CTGTAAGTCATTACAATAAATTCCCTTTAAATATATAAAGACATTCCATA
GTTCCCCCCCCCCCCANAGAACCCTGACTAATACATGGTCCATCAAAAAG
ACCCAGCAAATAAATACTGGATAGTGTCCGATAAGTCCAGTCAGGTAAAT
AAAGGTTAGCAATAGTTTGAATCACACAAATTATGTGTGTGGAATGTTTA
CGCCTTGTGTCACTTGGCTTTTGAGATTTCAGCCTGGGCTCTATTAATTA
CTTTTTTGTGTTAACTATCATCTATTACTAATCACGGAAGGACGACAGAT
GTATGTAAATTTCTGTTTCATCATCCGTGCTTACCCTCCATCTTTCATCA
TTCATTTCATTTAATATCATCTTCTTCAATTCCCTCTTTAAATCTGTCTT
CTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_o08.b1 MSMg01no368_o08.b1 CHROMAT_FILE:
MSMg01no368_o08.b1 PHD_FILE: MSMg01no368_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:28 2005
         (242 letters)



>mm_chr11_77890146_77890787
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgaactcataagagatccacctgcctctgcctcccaagtgctgggattaaagacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgaactcataagagatccacctgcctctgcctcccaagtgctgggattaaagacatg 260

                                                                       
Query: 61  cataaacatacatagttagagaatggctgtctttgatatcagcatcctgcctttccttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataaacatacatagttagagaatggctgtctttgatatcagcatcctgcctttccttca 320

                                                                       
Query: 121 tgggcaaactgttaactgatcttagatctcttatccttcggtacgatttcaatgctaatg 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tgggcaaactgttaactgatcttagatctcttatccttcggtatgatttcaatgctaatg 380

                                                                       
Query: 181 tgaccccaaggtaagagggtgaccatgaataaatgaaagattaatgctggagatgcggct 240
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaccccaagggaagagggtgaccatgaataaatgaaagattaatgctggagatgcggct 440

             
Query: 241 ca 242
           ||
Sbjct: 441 ca 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)