BAC Information

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BAC

Clone NameMSMg01-369F06
Chromosome11 (Build37)
Map Location 67,759,047 - 67,955,674
singlet/doubletdoublet
Overlap geneWdr16, Stx8
Upstream gene9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43
Downstream geneNtn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369F06.T7 (MSMg01no369_f06.b1)MSMg01-369F06.TJ (MSMg01no369_f06.g1)
ACCAG476343AG476344
length775792
length of high quality
(start - end)
259 (35 - 293)377 (76 - 452)
definitionCHROMAT_FILE: MSMg01no369_f06.b1 PHD_FILE: MSMg01no369_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:01 2005CHROMAT_FILE: MSMg01no369_f06.g1 PHD_FILE: MSMg01no369_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,759,047 - 67,759,302)(67,955,298 - 67,955,674)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATAAC
CTCTGACAAAGAAGCTCATGGTAACATCGGTCTCCCAAGACGTAAGGACA
GGTCAGCCCAGCTCTGAGTGCAGCAGAGTCAGGGCCACCTGCAGCTGGAG
GGTGAATTTTACTTGACATTCATTCGGGTCTGATGCTAACACACACATGA
CCAGTGCCAGCTGCTGAGTCACCTCCAAAGGGCTCTTAGGATAAGGATGT
GCTTCCTCTATGGGGACACACATTTGCTTTATTCCAGTCTCCAAAGGCTA
CTCTCATAAAAGGGACTATGCATTAAAGGAGGAAGAATAGATCAAGGAAT
GTAGCAGAGAGTTCCATGAATGAATTATGATTCCGTATATAATCACATCA
ATAACATCTCTTTGTGGAATAGTTTGCTTTTCAACAGTGCATTTCCTCAT
CACACATCTTTATTTCCTAATAAAGGTATATCCGTGCCTTTTTATGTATC
TGTTTCTCATCTTCCGTGTTTTCTGTTTTCCCTTTTTTCCTCTATGCCAT
GCTTTGTGTGTTTGTTTCATTTTCCCTCCTTTTTCTTTTTTTTTTGTCCC
CCCCCATTTCTTTTTTTTTCTCTTTTTTTCCCCTTTTTTCCTCTTTTTTT
ATTTTCTCCTTCTTTTTTTTTTCCCTTACCTCCTTTTTTTTCTTTTTATT
TACTTTTCTTTTTTCTTTTTCTTTTTTCTTTTACTCTTTTCTTTATTTTT
TCTTCCTTTTTCTTTATTTTTTCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTACCAGGGTGAAAGCCTTTTCGGC
TAGGAAGCAGAAGCCACCAGGAATGTGAGAGATCCAGCCTTGGAAAGATA
ATGCTGTCCATCCATAGGTGCAAAGTCAAAACCACCATGCCAGAAATGAG
GAATATAAAGTGCTTTTGATCTTTAATTAGGTCCTTACAGGGGTAGTAAA
CAGGCTGGGGAGAGAGGCTTTCCAGTGAGAGCAACATTTCCAGTGTCTCT
CACCAACAGTTGTCATCTTCAGTATTATTTGTTGGTTTTAGCTCTGTCTT
ACAAAGTTACAGCCAGAAAGGGGTGGAGGAGAAATGAATTTCAGTGTATT
TAAATAAATGCCAAGTTCAACCCAAAATGTCCCTTTGAAAGTGCAACTGA
AACAGAAAGTGACCCAAGTGGCCCAAGTAGCATCAGAGGACAGAGAATTT
TACCATCATGAAAACTGTATGCAATGCCCATTAGGGCTGAAAGCATATTT
CTGGTTTATGCCTGTTTCTACAACATGCCCCAAGAATAACCACCTTTAAA
ATTCCTTAGGAACATATCCTTTTTAATTAAGAATCCTCCAGTATAAACCT
TAAACTTAATGGCTTGTATTTTTTGTATAAATGTTTCTAACCTTTTCGTT
GTTTTCTACTTCCCTGACCCTTTTGTTGCCAATCCCTCCCCCCTTTTTTT
TTTTTCCCCCCCTTTTTCTTTCTTTCTCTCTCTTCTCTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_f06.b1 MSMg01no369_f06.b1 CHROMAT_FILE:
MSMg01no369_f06.b1 PHD_FILE: MSMg01no369_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:01 2005
         (259 letters)



>mm_chr11_67758844_67759502
          Length = 659

 Score =  480 bits (248), Expect = e-140
 Identities = 254/256 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccataacctctgacaaagaagctcatggtaacatcggtctcccaagacgtaagg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccataacctctgacaaagaagctcatggtaacatcggtctcccaagacgtaagg 263

                                                                       
Query: 64  acaggtcagcccagctctgagtgcagcagagtcagggccacctgcagctggagggtgaat 123
           |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 acaggtcagcacagctctgagtgcagcagagtcagggccacccgcagctggagggtgaat 323

                                                                       
Query: 124 tttacttgacattcattcgggtctgatgctaacacacacatgaccagtgccagctgctga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttacttgacattcattcgggtctgatgctaacacacacatgaccagtgccagctgctga 383

                                                                       
Query: 184 gtcacctccaaagggctcttaggataaggatgtgcttcctctatggggacacacatttgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtcacctccaaagggctcttaggataaggatgtgcttcctctatggggacacacatttgc 443

                           
Query: 244 tttattccagtctcca 259
           ||||||||||||||||
Sbjct: 444 tttattccagtctcca 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no369_f06.g1 MSMg01no369_f06.g1 CHROMAT_FILE:
MSMg01no369_f06.g1 PHD_FILE: MSMg01no369_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:01 2005
         (377 letters)



>mm_chr11_67955098_67955874
          Length = 777

 Score =  714 bits (369), Expect = 0.0
 Identities = 375/377 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaccagggtgaaagccttttcggctaggaagcagaagccaccaggaatgtgagagatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttaccagggtgaaagccttttcggctaggaagcagaagccaccaggaatgtgagagatcc 518

                                                                       
Query: 61  agccttggaaagataatgctgtccatccataggtgcaaagtcaaaaccaccatgccagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agccttggaaagataatgctgtccatccataggtgcaaagtcaaaaccaccatgccagaa 458

                                                                       
Query: 121 atgaggaatataaagtgcttttgatctttaattaggtccttacaggggtagtaaacaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atgaggaatataaagtgcttttgatctttaattaggtccttacaggggtagtaaacaggc 398

                                                                       
Query: 181 tggggagagaggctttccagtgagagcaacatttccagtgtctctcaccaacagttgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tggggagagaggctttccagtgagagcaacatttccagtgtctctcaccaacagttgtca 338

                                                                       
Query: 241 tcttcagtattatttgttggttttagctctgtcttacaaagttacagccagaaaggggtg 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcttcagtatcatttgttggttttagctctgtcttacaaagttacagccagaaaggggtg 278

                                                                       
Query: 301 gaggagaaatgaatttcagtgtatttaaataaatgccaagttcaacccaaaatgtccctt 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gagaagaaatgaatttcagtgtatttaaataaatgccaagttcaacccaaaatgtccctt 218

                            
Query: 361 tgaaagtgcaactgaaa 377
           |||||||||||||||||
Sbjct: 217 tgaaagtgcaactgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)