BAC Information

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BAC

Clone NameMSMg01-370E10
Chromosome11 (Build37)
Map Location 11,432,406 - 11,432,745
singlet/doubletsinglet
Overlap genenone
Upstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik
Downstream geneIkzf1, Fignl1, Ddc, Grb10, Cobl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370E10.T7 (MSMg01no370_e10.b1)MSMg01-370E10.TJ (MSMg01no370_e10.g1)
ACCAG477062AG477063
length761793
length of high quality
(start - end)		476 (43 - 518)340 (71 - 410)
definitionCHROMAT_FILE: MSMg01no370_e10.b1 PHD_FILE: MSMg01no370_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:16 2005CHROMAT_FILE: MSMg01no370_e10.g1 PHD_FILE: MSMg01no370_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAG
CCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCA
GGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACT
TGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATAC
AAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATA
GTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGAT
AAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAA
TGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAA
ACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGAC
TTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAA
GAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT
GGATTGGCAGGACCACATTGTAAAAATGGGTATCTTGCCAAAAGCAATCT
ACAGATTCCATGCAATCCCCATCAAAATTCCAACTCATTCTTCACCGAAA
TGGAGAGAGAAATTGTTAATTTGTCCTTTTTAACAAAACCCCAGGAAAGA
AAAGGCCTCTN

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATGGTCACAACTTAGTGAATAAGTGGGCT
TGTTTGTATGATAGGAAACATGGATAGTTAAGGTACTCTGTACAGGCACC
GATAATTGACAGACAAGCAAAAAAACATAGACTTTTTTCTTTTTTGAAGA
TGCTCAGCAACACAGCATACAGATCTGAAGAGGCAGTGTCCCTGCCTTAA
TAGGGCATAGACCCCAGCAGCCAAAAGACCCTAAGTATAGGGAAGATGAG
GATTAGTTTTCTAGTCTTGCTAGTTGGAACTTGGCTGTATGACACGTCTT
TGCTTGCTGCTTTTCAACTTTACACATGGCCAGTGCTTACAATACTAACT
TATTTTTTAACACCTTATTTTATTTTATTTTACTTCCTTACTTATTCACT
TTACATCCCTCTCATTGTCCACCTCCCTATTCTACTGTCTACCTCCCTCT
ATCCTTCCCCCATCCTTCCTTCTCCTCTCTTATCCCATGTGTTACCCCTG
GCGTATCCCCCCCCTCCTTCTTTAATTTTCCCTTTCCGGATTTTCTCTTT
TCTTGCTCTTTTTTATCCGCTATTTCTCTTTTCCGTCGTTCCAACCACAC
TCCCCTTTTCGCTTACCCCTTTACCTTTTTCCCCTTATTTCTTCCTCTTT
TCATTCCCTCCCCCTTCTTCTCCTTCTTTCTCCCCTCTTCTTTCCCCCTT
TCTTTTTATTTCCGCTCGCTCTTCTTCTTCTCCCTCCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_e10.g1 MSMg01no370_e10.g1 CHROMAT_FILE:
MSMg01no370_e10.g1 PHD_FILE: MSMg01no370_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:17 2005
         (340 letters)



>mm_chr11_11432206_11432947
          Length = 742

 Score =  630 bits (326), Expect = 0.0
 Identities = 336/340 (98%), Gaps = 2/340 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatggtcacaacttagtgaataagtgggcttgtttgtatgataggaaacatggatagtta 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 540 aatggtcacaacttagtgaataagtgggcttgtgtgtatgataggaaacatggatagtta 481

                                                                       
Query: 61  aggtactctgtacaggcaccgataattgacagacaagc--aaaaaaacatagactttttt 118
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 480 aggtactctgtacaggcaccgataattgacagacaagcaaaaaaaaacatagactttttt 421

                                                                       
Query: 119 cttttttgaagatgctcagcaacacagcatacagatctgaagaggcagtgtccctgcctt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cttttttgaagatgctcagcaacacagcatacagatctgaagaggcagtgtccctgcctt 361

                                                                       
Query: 179 aatagggcatagaccccagcagccaaaagaccctaagtatagggaagatgaggattagtt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aatagggcatagaccccagcagccaaaagaccctaagtatagggaagatgaggattagtt 301

                                                                       
Query: 239 ttctagtcttgctagttggaacttggctgtatgacacgtctttgcttgctgcttttcaac 298
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 300 ttctagtcttgctagttggaacttggctgtatgacacctctttgcttgctgcttttcaac 241

                                                   
Query: 299 tttacacatggccagtgcttacaatactaacttatttttt 338
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tttacacatggccagtgcttacaatactaacttatttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 742
Length adjustment: 9
Effective length of query: 331
Effective length of database: 733
Effective search space:   242623
Effective search space used:   242623
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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