BAC Information

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BAC

Clone NameMSMg01-371M15
Chromosome11 (Build37)
Map Location 89,259,730 - 89,260,103
singlet/doubletsinglet
Overlap gene4932411E22Rik
Upstream geneMsi2, LOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047
Downstream geneAnkfn1, Pctp, Tmem100, LOC100039104, Mmd, Hlf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371M15.T7 (MSMg01no371_m15.b1)MSMg01-371M15.TJ (MSMg01no371_m15.g1)
ACCAG478208AG478209
length773774
length of high quality
(start - end)		466 (83 - 548)539 (72 - 610)
definitionCHROMAT_FILE: MSMg01no371_m15.b1 PHD_FILE: MSMg01no371_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:22 2005CHROMAT_FILE: MSMg01no371_m15.g1 PHD_FILE: MSMg01no371_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATCTGGAGCTGAGCT
CTTTTTAGTCAAAGATTTTAAATTACTGCCTCAATTTCAATGTGTGCTGT
AGATCTACTTAGATTTTTTTCATTTTGGTTTAACTTTAGTAAGTCATACC
TATCTAGAAATCAATCATTTCTTATAGAGTTTCTATTTTAGTGGAGAATA
TACATTAAAGGCATGTCCTCATGATTTTCTGGATTTTGTTGGTGTTTCTT
GTAATGTCTCTGTTTTCATCTCTACTTTTAGTAATCTGGGTCTTTTTTCT
ATTTTAATTTACTTGGTTAAGGATCTGCCAATCTTGTTTATGTTATTTTA
TTTACTCAATATTTGTTGAGATGTTCTTTGTGTTTTAATATGTTCTTTAT
TTTGAAGAAAGTTCCATGGGCTGCTGAGAGAACAAAGTGAATCCTGTCCT
GTGTGGGTGGGATATTTGGTAGATGTCTCAAAGGTGTATGTATGTATGTA
TGTATGTATGGTATGAATGTATNNTTTTNATTAATTAATTATATTATAAT
TTAATTTCAAATTTTATTTTTTTTTTTTTTTAATATTTTATAATTTTAAT
TTTATATTTTCTTCTNTATTANATAATTAAATATTTTTATTTTATTTTTA
TACTTCCTCTTATTATCCATTTTTATCTCTATCTCTCTCCTTAATATTTC
CTTTCTTCATTTTATTACTACCA

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATGCCCTTTTCTATCCTCAACCGGCACCTGCATGCACGTACATAGA
AAATAATAAATAAGTCTTTTTTTTTAAGTACAAATTGCTCTAGTCAGGTA
CTCTAATCATTAACTAGAAGGAGAAAGACACTGTCAGGCTCCTCAGGAAG
TACCCATTGTTACAGGTATTTTACTGTATGTTTCTAGTGGATTGAATCAT
GAAACTGCCACACCCAAAAAATATGTCCAAGTGTTAACCTTTGCAGCCTG
GAATTGTGGTCATATTCATTTATTTTTATATATCTTGCAGATACAACTAA
TGATATTAAGATGAGATCATTCTGAGTTATCTGGGCCCTTAACCCAATAT
CAAGAGTCTTCATATGAAACAGAAGACAACAGACACTGAAGAAAAGCTAT
GAGACAATAAAAAATGTAGATGAACACTACCAGAATCCAGAAGAAGCAAG
GAGCTGGTATTTCCTCACTAAGATCTGCCAGAGGGAATGTAGTCCTCCTA
GCATGCTGACTTTGAACTTGGCCTTCCAGAGCTATGGGAGACACACCTTT
ATTCTCTAAAGCCATCAGGGGCCGAATTTGCTATAGCCCTGGAAGGGAAA
CCAAGTCCAATGCCTAGGCTTCCCTGCCAGGGACTTAACAAATATAAATT
CTGTGGCCGGCCACTTTATATGAACCGAATCCCTGGCCCCAAAAAGGTTC
CCGAGGAGAACCAGGGGAATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_m15.g1 MSMg01no371_m15.g1 CHROMAT_FILE:
MSMg01no371_m15.g1 PHD_FILE: MSMg01no371_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:22 2005
         (539 letters)



>mm_chr11_89259165_89260103
          Length = 939

 Score =  690 bits (357), Expect = 0.0
 Identities = 370/379 (97%), Gaps = 9/379 (2%)
 Strand = Plus / Minus

                                                                       
Query: 165 agtggattgaatcatgaaactgccacacccaaaaaatatgtccaagtgttaacctttgca 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 agtggattgaatcatgaaactgccacacccaaaaaatatgtccaagtgttaacctttgca 880

                                                                       
Query: 225 gcctggaattgtggtcatattcattt----atttttatatatcttgcagatacaactaat 280
           ||||||||||||||||||||||||||    |     ||||||||||||||||||||||||
Sbjct: 879 gcctggaattgtggtcatattcatttaaaaa-----atatatcttgcagatacaactaat 825

                                                                       
Query: 281 gatattaagatgagatcattctgagttatctgggcccttaacccaatatcaagagtcttc 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gatattaagatgagatcattctgagttatctgggcccttaacccaatatcaagagtcttc 765

                                                                       
Query: 341 atatgaaacagaagacaacagacactgaagaaaagctatgagacaataaaaaatgtagat 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 atatgaaacagaagacaacagacactgaagaaaagctatgagacaataaaaaatgtagat 705

                                                                       
Query: 401 gaacactaccagaatccagaagaagcaaggagctggtatttcctcactaagatctgccag 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gaacactaccagaatccagaagaagcaaggagctggtatttcctcactaagatctgccag 645

                                                                       
Query: 461 agggaatgtagtcctcctagcatgctgactttgaacttggccttccagagctatgggaga 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 agggaatgtagtcctcctagcatgctgactttgaacttggccttccagagctatgggaga 585

                              
Query: 521 cacacctttattctctaaa 539
           |||||||||||||||||||
Sbjct: 584 cacacctttattctctaaa 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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