BAC Information

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BAC

Clone NameMSMg01-371N22
Chromosome11 (Build37)
Map Location 44,935,762 - 45,144,127
singlet/doubletdoublet
Overlap geneLOC382510
Upstream geneIl12b, Ublcp1, 3732413I11Rik, Ebf1
Downstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371N22.T7 (MSMg01no371_n22.b1)MSMg01-371N22.TJ (MSMg01no371_n22.g1)
ACCAG478270AG478271
length763760
length of high quality
(start - end)		373 (84 - 456)396 (52 - 447)
definitionCHROMAT_FILE: MSMg01no371_n22.b1 PHD_FILE: MSMg01no371_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:28 2005CHROMAT_FILE: MSMg01no371_n22.g1 PHD_FILE: MSMg01no371_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,143,755 - 45,144,127)(44,935,762 - 44,936,151)
sequence
NNNNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGACTATTTAAGTTTC
CCATGGTATAAATCATTCCCCAGGGAATTCTCTTGTGCATATCCCACTGA
TTGCCAAAGGATAAACTGTTAAGAGTGAAATTGCTTACTAAGCATAATGT
TTGTTTTTAGGACTCTAGTGCCTGTTCTTACTAAGCCTCCTGAAAGCTTC
AGATTAGATGATGCTTTCGTTTTCTCTGAGCTCTCAAGTGTTCTCTGGAT
ACAGGCTTTTTCTTGTTTTGCTTGTTTCATCTATTCTTATGAAACCTCTC
ATTAGATTGATATATCCTAAAGGGAAGAATTCCAAAACAGTTTGAATGAG
TTCTCAAGCCTAAATCGTAGGAGACCATCTTCACCCTTCACTGTAGCATC
TTGAGAAAAGCCCTGCGCAGAAAAGATTCTGTGGTCAGATGGGTTCAGCT
GTATCCTTAAGTCTGTGCAGATGTTGAGAAGTCCACAGAAAGCCTGATTG
GGGTCTACTCTGGGGGGAACATTTCCTACCCCCGGAACTTACTAATGGAA
CTTAAGTAAAATTGCCCCTAATCCGAAAAACCTGCCGGGGGATCCTTGGG
GGGGAAGTAAAAAAAAAAGAAAATAAACGGCCCTGAAAAAGGCCTCTTTA
AATTGGGAAGGAAAAAAACTTTATTTTTCTTTTGGTCCAATTTACTGCAT
ATTTGCAATAACA

NNNNNNTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTAAATATGATCACTTGAGATCAGGCATGAAAGGGGAAGA
AGACAGGTATGCTGTTAGATCAGCCTGAGCAGACAAATGCAGGGTACAAG
TGCCATGGGGGCAAGTGAACTCTAGCAACAAACTTTTCTCCTTGACCTTG
AAGTGTTCCCAACCTGTATACTAATGGGGGTAGGTATGGGACTACTCAAT
GTCTTTACGCTTAACTAGCTTTTCTATAGAATCCAGGACCATCTGCCTAG
GGAGTGGTGCCACCTACAGTGGGCTTAGCCTTCTACAGTGACAGTCAACC
AAGGGCAACTCAGAAAAAACTGGGAATTTGTAGAGATAGTTTAATTTTAA
CATGTGCCTAAACTGGTGGGAGATATGTGGAGATCAGCTAATACCGTTAA
ATATTCTGAAATGCCCAGGACTCCTACAAAGGATTAAACAATCCAGATTG
TCAACAGTTGTCAAGGCGGCAAAACCTTGACCTAACAGTTAAGAAGCAGA
TAACAGTGGGTACAACTGGTTGATTGAAATACTTGAAGAACTGTTCTCCC
AAAAACATTTGTGGGTTTTGAAAAAAAATTTTTTTTTCTTAAAAGTTCTT
AATTTTTGGGGGAAAATTAAACATGCCCAAAATTTTTTCTATGAAATAAT
GCCCCCCCCACAAAATTTGTTTTGTTTGGGGTTTGTGTATTCTTATATAC
TTCATCTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_n22.b1 MSMg01no371_n22.b1 CHROMAT_FILE:
MSMg01no371_n22.b1 PHD_FILE: MSMg01no371_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:28 2005
         (373 letters)



>mm_chr11_45143555_45144327
          Length = 773

 Score =  690 bits (357), Expect = 0.0
 Identities = 369/373 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgactatttaagtttcccatggtataaatcattccccagggaattctcttgtgcatatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttgactatttaagtttcccatggtataaatcattccccagggaattctcttgtgcatatc 514

                                                                       
Query: 61  ccactgattgccaaaggataaactgttaagagtgaaattgcttactaagcataatgtttg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 513 ccactgattgccaaaggataaactgttaagagtgaaattgcttactaagcataatgttcg 454

                                                                       
Query: 121 tttttaggactctagtgcctgttcttactaagcctcctgaaagcttcagattagatgatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tttttaggactctagtgcctgttcttactaagcctcctgaaagcttcagattagatgatg 394

                                                                       
Query: 181 ctttcgttttctctgagctctcaagtgttctctggatacaggctttttcttgttttgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctttcgttttctctgagctctcaagtgttctctggatacaggctttttcttgttttgctt 334

                                                                       
Query: 241 gtttcatctattcttatgaaacctctcattagattgatatatcctaaagggaagaattcc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 333 gtttcatccattcttatgaaacctctcattagattgatatatcctaaagggaagaatccc 274

                                                                       
Query: 301 aaaacagtttgaatgagttctcaagcctaaatcgtaggagaccatcttcacccttcactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aaaacagtttgaatgagttctcaagcctaaatcgtaggagaccatcttcacccttcactg 214

                        
Query: 361 tagcatcttgaga 373
           |||||| ||||||
Sbjct: 213 tagcattttgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no371_n22.g1 MSMg01no371_n22.g1 CHROMAT_FILE:
MSMg01no371_n22.g1 PHD_FILE: MSMg01no371_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:28 2005
         (396 letters)



>mm_chr11_44935559_44936354
          Length = 796

 Score =  723 bits (374), Expect = 0.0
 Identities = 386/390 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaaatatgatcacttgagatcaggcatgaaaggggaagaagacaggtatgctg 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaaatatgagcacttgagatcaggcatgaaaggggaagaagacaggtatgctg 263

                                                                       
Query: 64  ttagatcagcctgagcagacaaatgcagggtacaagtgccatgggggcaagtgaactcta 123
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttagatcagcctgagcagacaaaggcagggtacaagtgccatgggggcaagtgaactcta 323

                                                                       
Query: 124 gcaacaaacttttctccttgaccttgaagtgttcccaacctgtatactaatgggggtagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcaacaaacttttctccttgaccttgaagtgttcccaacctgtatactaatgggggtagg 383

                                                                       
Query: 184 tatgggactactcaatgtctttacgcttaactagcttttctatagaatccaggaccatct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatgggactactcaatgtctttacgcttaactagcttttctatagaatccaggaccatct 443

                                                                       
Query: 244 gcctagggagtggtgccacctacagtgggcttagccttctacagtgacagtcaaccaagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcctagggagtggtgccacctacagtgggcttagccttctacagtgacagtcaaccaagg 503

                                                                       
Query: 304 gcaactcagaaaaaactgggaatttgtagagatagtttaattttaacatgtgcctaaact 363
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 504 gcaactcagaaaacactgggaatttgtagagatagtttaattttaacatgtgcgtaaact 563

                                         
Query: 364 ggtgggagatatgtggagatcagctaatac 393
           ||||||||||||||||||||||||||||||
Sbjct: 564 ggtgggagatatgtggagatcagctaatac 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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