BAC Information

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BAC

Clone NameMSMg01-371P10
Chromosome11 (Build37)
Map Location 121,352,976 - 121,415,312
singlet/doubletdoublet
Overlap geneTbcd, Zfp750
Upstream geneSlc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k
Downstream geneB3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371P10.T7 (MSMg01no371_p10.b1)MSMg01-371P10.TJ (MSMg01no371_p10.g1)
ACCAG478341AG478342
length769864
length of high quality
(start - end)		460 (72 - 531)230 (45 - 274)
definitionCHROMAT_FILE: MSMg01no371_p10.b1 PHD_FILE: MSMg01no371_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:36 2005CHROMAT_FILE: MSMg01no371_p10.g1 PHD_FILE: MSMg01no371_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,414,853 - 121,415,312)(121,352,976 - 121,353,199)
sequence
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACTACGGTGTTCATAGTAACCCTGAGC
AAGCCGCAACCCAGAGGCCCTTTTACAGGTAAGTGGCTTGACACAGCAGG
GCTCACTCAGAGAACAGAGAACAGATCTGCTCACAGGAGAACCAGGGCTC
ACTCAGAGAACAGATCTGCTCACAGGAGAACCAGGGCTCACTCAGAGAAC
AGATCTGCTCACAGGAGAACCAGGGCTCACTCAGAGAACAGATCTGCTCA
CAGGAGAATTTAATGGCCTGGGACTTCCCAACATACTGGACTCAGTGAGA
ATTCCAGTCCCAAGGACTGTCACTTTAGTGATGTAACAGCATTGCAAGAT
TGGAAAGTAGACTGATAGTTGGTAGTAGTTAAAAGGATCATGTAGGGACA
TCTGTGATAAGGAATACTGTGTGCCTAGATTGTAGGCGATTCTCACATAT
GTGTGGGATGGAGCCTCACAGAACTAACCATGTGCACAGGACATATACNA
CTGAGAGTCCTAACCAGGACTCCTGAGTTGTCTTAAACTTGTGTGGGTAC
CCATAGAGAGCCAGGGACCCCAGACTCAAATTTCCCGGAATCTTAATAAT
CCTCGGGGAAAATCTCTCTAGTGGCAAAATAAAAAACCAATGGGAATTTA
TACAAAAAACAAAAAGGGGGCTTTTCCAATATACTTGGCCGGGCGGGTTA
AATTGGCCTAAAAGCAAAC

CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTTCTATAAACCCAAGTTCACTGATCATTTTGGGAATGACTTTC
CAAACTATGACATGTGTTTTCCAAAGGGAGGACAGTGTTCTAGTGGAAGT
GGAAGAGAACTACAAACAAACAAACAAACAAACAAACATACACATATTTA
ACTTATATATAAATATGTAACCATATATATGTATTTATTTGTGTGTATAT
GGTGTGTATGTATGTGAATATGNNNNTNNNNNNTTTTTTTTTTTTTTTNT
TCCTTNTTTTTTTTTTTTTCTTTTTTTTNNTNNNTNTNTTCTTTCTTTCT
TTTTTTCTCCTTTTTTTTCTCTCTCCTCCTTTCCTTTTTTCCTTCTTCCT
CTCCTTTCCCTCTTCACTTTCTCCCCCCTCCCTTTTTTTTTTTCCTCCCC
TCCTTCTTCTCTTTTTTCTCCCCCTTTCTCTTTTTCCTCCTTCCTTTCCT
CTTCTTTCCTCTTTCTTCTTTTTCTCTCCCCTCTCCTTCTTTTCTTCTTC
CTTCCCTCTCCTTTCCCTTTTTCTTCTCTCTTTTCTTTTTCTTCTCTCTT
CTTACTTTTCCTCCTATCACTTACCTACCATCTCATTTATACCTCATTCC
CTCTAATCCTTTCTTTCTATTCATCTTTATCTCTTCTCCATATCTTTATT
CTATTCTTCACCTTATCCATCTCAATTAATTAATCACTACTTCTTCCTAT
CATCCCTACCTTATACTTATATTCTCCCTTTATCTCAATTTATTAACCTC
CACATTTATTCTCTATACTTCTTCATTTATTTTCATCAATCTCTCTTTCT
TCTATCTTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_p10.b1 MSMg01no371_p10.b1 CHROMAT_FILE:
MSMg01no371_p10.b1 PHD_FILE: MSMg01no371_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:36 2005
         (460 letters)



>mm_chr11_121414653_121415512
          Length = 860

 Score =  859 bits (444), Expect = 0.0
 Identities = 456/460 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcactacggtgttcatagtaaccctgagcaagccgcaacccagaggcccttttacaggta 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 660 tcactacggtgttcatagtaaccctgagcaagccacaacccagaggcccttttacaggta 601

                                                                       
Query: 61  agtggcttgacacagcagggctcactcagagaacagagaacagatctgctcacaggagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agtggcttgacacagcagggctcactcagagaacagagaacagatctgctcacaggagaa 541

                                                                       
Query: 121 ccagggctcactcagagaacagatctgctcacaggagaaccagggctcactcagagaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ccagggctcactcagagaacagatctgctcacaggagaaccagggctcactcagagaaca 481

                                                                       
Query: 181 gatctgctcacaggagaaccagggctcactcagagaacagatctgctcacaggagaattt 240
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 480 gatctgctcacaggagaaccagggctcactcagagaacagacccgctcacaggagaattt 421

                                                                       
Query: 241 aatggcctgggacttcccaacatactggactcagtgagaattccagtcccaaggactgtc 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 420 aatggcctgggacttcccaacatactggacacagtgagaattccagtcccaaggactgtc 361

                                                                       
Query: 301 actttagtgatgtaacagcattgcaagattggaaagtagactgatagttggtagtagtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 actttagtgatgtaacagcattgcaagattggaaagtagactgatagttggtagtagtta 301

                                                                       
Query: 361 aaaggatcatgtagggacatctgtgataaggaatactgtgtgcctagattgtaggcgatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aaaggatcatgtagggacatctgtgataaggaatactgtgtgcctagattgtaggcgatt 241

                                                   
Query: 421 ctcacatatgtgtgggatggagcctcacagaactaaccat 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctcacatatgtgtgggatggagcctcacagaactaaccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no371_p10.g1 MSMg01no371_p10.g1 CHROMAT_FILE:
MSMg01no371_p10.g1 PHD_FILE: MSMg01no371_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:36 2005
         (230 letters)



>mm_chr11_121352772_121353401
          Length = 630

 Score =  433 bits (224), Expect = e-126
 Identities = 224/224 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctttctataaacccaagttcactgatcattttgggaatgactttccaaactat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttctataaacccaagttcactgatcattttgggaatgactttccaaactat 264

                                                                       
Query: 65  gacatgtgttttccaaagggaggacagtgttctagtggaagtggaagagaactacaaaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacatgtgttttccaaagggaggacagtgttctagtggaagtggaagagaactacaaaca 324

                                                                       
Query: 125 aacaaacaaacaaacaaacatacacatatttaacttatatataaatatgtaaccatatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacaaacaaacaaacaaacatacacatatttaacttatatataaatatgtaaccatatat 384

                                                       
Query: 185 atgtatttatttgtgtgtatatggtgtgtatgtatgtgaatatg 228
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgtatttatttgtgtgtatatggtgtgtatgtatgtgaatatg 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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