BAC Information

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BAC

Clone NameMSMg01-372L01
Chromosome11 (Build37)
Map Location 94,027,159 - 94,027,573
singlet/doubletsinglet
Overlap genenone
Upstream geneCar10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440
Downstream geneTob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372L01.T7 (MSMg01no372_l01.b1)MSMg01-372L01.TJ (MSMg01no372_l01.g1)
ACCAG478895AG478896
length761756
length of high quality
(start - end)
255 (62 - 316)416 (71 - 486)
definitionCHROMAT_FILE: MSMg01no372_l01.b1 PHD_FILE: MSMg01no372_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:29 2005CHROMAT_FILE: MSMg01no372_l01.g1 PHD_FILE: MSMg01no372_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CACAGTATTCACCCCCATCTCCAGTAATAATATCTTTTTTTTGGGGTCTT
TTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGA
ACTCAATCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTC
TGCCTCCTGATTGCTGGGATTGAAGGTGTGTGCCACCACACCCGGCCAGT
AATAATATCTTAATATTCTTAAATTTTAGTGTTAAGTTTCATTCTTGAGT
CTGAAGCTGTTAATTTTATGTCAGAGTGCCTGCCTAGAATGCACAAAGTG
TGCCTGGGTTCAATCCTAGCACTGTAACATAAAGTTAGTTGTAATTTCTA
GTCCACAGGCAACATCGGTTAGTCCCAGGAGCTTCCACTTCCAAGGTTCT
TGACTGCATTGATACTTCCAGATGCTACCCTGTCAGGAACATCCATTACC
TCTAGATTTCTTTAAAAGGTATTTTTGTTACTTCTTTTACCTTGGAAACT
ATGAATACCTCACTTTGTATCACGCGTACATTCTCCGAGTAAATACCTGT
CTTGCTTTTAAGTTCCCTCCTCTGTGGCCCCTCCTCTCGCCGCGTCTGGC
CACTATCATCTCTTGTGTTCCACGCCATATTTAACTGCCTTCCCCCCCTT
TCTTCCATCCATACCTACACTTAACTATAGAATTTCCCCTCACCCCCCCT
CCTTCTTTGTG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTGTCACCAAGACAAGTTACCATTTAACC
AACCTATGGGAACCGGGGCCAAACTCTCCAAATGACAAAACAACAGGGCC
TGTTTGCTGGGGTTAAATAGCCCAGCGGAGCCTGGAGTATGACTCTCCTC
CCACAACCTCCCACCCGCCTTGTGCCCTGCCCAGTCCTGCGAGGTGACTT
GGGCAGTATGGGGGGAGAGGTGACTTGGAGAGGCAGAATTAAGGTCTAAG
GGAAACCGACATTTAAATAGGAGTGAATTGGGCTAGGTGTGGCTCCATTG
GTGTGCTAGAAGCCCTGGGTTCCATCCCCAGCACCGCGTAAGTCTTCCGT
GAATCATTCCAGTGATCATTGCCTTTAGTCCTAGCAGTCAGGAGGTGGAG
GCGGGAGAATCAGAGTTTCAAGGTCATCTGTGCCTACATAGGAACTTTAA
ACAGTGCGGATTACAGGCAAAGACTGAGGTGGAAAGAGAAAGAATTGAGG
GGCTGGGAAGCAGGGACGTACTGATGGAGCAGTTGTTTCATCCAGGTCCC
CTTGCCCCCCAGCTGAAGGTTAGCCCCTCAGGTCCTTCTCATCCCTGATT
TCCATATGTCCGGCGTTTTTTGTTGGCATTTGGTTTTTCTTTTTAGGTAC
CCCTATAAAGTCCCACGCCCCCTCCTTGTTTTACCTTACCCTCCCGTGTT
ATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_l01.g1 MSMg01no372_l01.g1 CHROMAT_FILE:
MSMg01no372_l01.g1 PHD_FILE: MSMg01no372_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:29 2005
         (416 letters)



>mm_chr11_94026959_94027773
          Length = 815

 Score =  743 bits (384), Expect = 0.0
 Identities = 408/416 (98%), Gaps = 1/416 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtcaccaagacaagttaccatttaaccaacctatgggaaccggggccaaactctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtcaccaagacaagttaccatttaaccaacctatgggaaccggggccaaactctcca 260

                                                                       
Query: 61  aatgacaaaacaacagggcctgtttgctggggttaaatagcccagcggagcctggagtat 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 aatgacaaaacaacagggcctgtttgctggg-ttaaatagcccagcggagcctggagtat 319

                                                                       
Query: 121 gactctcctcccacaacctcccacccgccttgtgccctgcccagtcctgcgaggtgactt 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 320 gactctcctcccacaacctcccaccagccttgtgccctgcccagtcctgcgaggtgactt 379

                                                                       
Query: 181 gggcagtatggggggagaggtgacttggagaggcagaattaaggtctaagggaaaccgac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 380 gggcagtatggggggagaggtgacttggagaggcagaattaaggtctaagggcaaccaac 439

                                                                       
Query: 241 atttaaataggagtgaattgggctaggtgtggctccattggtgtgctagaagccctgggt 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttaaataggggtgaattgggctaggtgtggctccattggtgtgctagaagccctgggt 499

                                                                       
Query: 301 tccatccccagcaccgcgtaagtcttccgtgaatcattccagtgatcattgcctttagtc 360
           |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 500 tccatccccagcaccgcgtaagtcttccgtgaatcaatccagtgatcattgcttttagtc 559

                                                                   
Query: 361 ctagcagtcaggaggtggaggcgggagaatcagagtttcaaggtcatctgtgccta 416
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccagcagtcaggaggtggaggcgggagaatcagagtttcaaggtcatctgtgccta 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 815
Length adjustment: 9
Effective length of query: 407
Effective length of database: 806
Effective search space:   328042
Effective search space used:   328042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)