Query= MSMg01no373_a07.b1 MSMg01no373_a07.b1 CHROMAT_FILE:
MSMg01no373_a07.b1 PHD_FILE: MSMg01no373_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:53 2005
(573 letters)
>mm_chr11_87832317_87833289
Length = 973
Score = 1021 bits (528), Expect = 0.0
Identities = 553/562 (98%), Gaps = 2/562 (0%)
Strand = Plus / Plus
Query: 8 ctaggagggcaaggatgtaggctcaggatgaatagagttggggaatgtgttctttgtatc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ctaggagggcaaggatgtaggctcaggatgaatagagttggggaatgtgttctttgtatc 267
Query: 68 ttgatgggtcttgttaagaccttgaatacagtaagcatgggacctctgttcatgcttcat 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttgatgggtcttgttaagaccttgaatacagtaagcatgggacctctgttcatgcttcat 327
Query: 128 ttgttcatttactactttatgtcttaggactgaccaaattctagaatgtacctagaaaga 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttgttcatttactactttatgtcttaggactgaccaaattctagaatgtacctagaaaga 387
Query: 188 tataaaagctgaaacctgcttttgcttcagaactggctgggatcatgttatagtgttgtc 247
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 388 tataaaagctgaaacctgcttttgcttcagaactggctgggatcatgttacagtgttgtc 447
Query: 248 taattgtcttgttcttttcaaccttcactccctccctggagagtctgttgactgactgag 307
|| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tagttgtctttttcttttcaatcttcactccctccctggagagtctgttgactgactgag 507
Query: 308 ctggcttgccaagcttcccataatagacagaactgtcccctcctagcaggaaccccgata 367
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 508 ctggcttgccaagcttcccataatagacagaactatcccctcctagcaggaaccccgatg 567
Query: 368 gtttccaaagaagatatatgaggtacaaggactccaccaggatggtggtagtgctcacca 427
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 568 gtttccaaagaagatatatgaggcacaaggactccaccaggatggtggtagtgctcacca 627
Query: 428 ctgggaaaaaaaatgctccatgcctcatctgtcagagctctgctcaaactgtgggcagtt 487
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctgggaaaaaa--tgctccatgcctcatctgtcagagctctgctcaaactgtgggcagtt 685
Query: 488 tttgggttgattgccctattttgcctggtcaaagtaagaggtcagctcttccaagttccc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tttgggttgattgccctattttgcctggtcaaagtaagaggtcagctcttccaagttccc 745
Query: 548 ctataggacaaatctcacagac 569
||||||||||||||||||||||
Sbjct: 746 ctataggacaaatctcacagac 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_a07.g1 MSMg01no373_a07.g1 CHROMAT_FILE:
MSMg01no373_a07.g1 PHD_FILE: MSMg01no373_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:53 2005
(247 letters)
>mm_chr11_88023152_88023798
Length = 647
Score = 474 bits (245), Expect = e-138
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 1 caagcagcccatactaggcctgtgttggggctacagagacatctgctacccagcaccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caagcagcccatactaggcctgtgttggggctacagagacatctgctacccagcaccaag 386
Query: 61 cagggcccagagagagctgcctagaggtgcacccctcctagaaacaacagctgaaccttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagggcccagagagagctgcctagaggtgcacccctcctagaaacaacagctgaaccttc 326
Query: 121 ggggaggggggggctatatttacttgggcctgggaaatgcttaccgctgacaggtagact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggggaggggggggctatatttacttgggcctgggaaatgcttaccgctgacaggtagact 266
Query: 181 tgaagtttgggttgaagagatcaaaagctttctgaccagatccataggttgcaaagaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaagtttgggttgaagagatcaaaagctttctgaccagatccataggttgcaaagaatt 206
Query: 241 tccta 245
|||||
Sbjct: 205 tccta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
