Query= MSMg01no374_b19.b1 MSMg01no374_b19.b1 CHROMAT_FILE:
MSMg01no374_b19.b1 PHD_FILE: MSMg01no374_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:14 2005
(521 letters)
>mm_chr11_47378992_47379912
Length = 921
Score = 946 bits (489), Expect = 0.0
Identities = 512/523 (97%), Gaps = 6/523 (1%)
Strand = Plus / Plus
Query: 5 gaattctctccacactttcattataagcagctttgaatgaagatctttgtgttgggtagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattctctccacactttcattataagcagctttgaatgaagatctttgtgttgggtagg 258
Query: 65 ttaaatgggagcttccacatgcaagattgattctttcaaaacacacacacacacacacac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttaaatgggagcttccacatgcaagattgattctttcaaaacacacacacacacacacac 318
Query: 125 acac------acaggtgccaggtagttgacattcaacttcttttgattggacagacattt 178
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acacacacatacaggtgacaggtagttgacattcaacttcttttgattggacagacattt 378
Query: 179 tgttgtttgttgttgtttgaaataagttcctactaggtagccttggctggcctagaactc 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgttatttgttgttgtttgaaataagttcctactaggtagccttggctggcctagaactc 438
Query: 239 accatgtagatgaagctggcttcaaacttgtaggaatccactggcttttacctcccaggt 298
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 439 accatgtagatgaagctggcttcaaacttgtaggaatccactggcctttacctcccaggt 498
Query: 299 actgggattaaagatgcacaccaccacatcgagcttgggcaggcattttgaaactcattt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 actgggattaaagatgcacaccaccacatcgagcttgggcaggcattttgaaactcattt 558
Query: 359 ccatagacagaacctccaatctgtctcaaaaccaaggtaagccaaaatatatctcagttc 418
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 559 ccacagacagaacctccaatctgtctcaaaaccaaggtaagccaaaatgtatctcagttc 618
Query: 419 ccaggtagggtatgctgcattttccagcctctgcaagatagggcctttctagtaacagaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccaggtagggtatgctgcattttccagcctctgcaagatagggcctttctagtaacagaa 678
Query: 479 atcaaagatcatgaacttggatcaatatgagaatcactattgc 521
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atcaaagatcatgaacttggatcaatatgagaatcactattgc 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_b19.g1 MSMg01no374_b19.g1 CHROMAT_FILE:
MSMg01no374_b19.g1 PHD_FILE: MSMg01no374_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:14 2005
(389 letters)
>mm_chr11_47566866_47567656
Length = 791
Score = 721 bits (373), Expect = 0.0
Identities = 386/391 (98%), Gaps = 2/391 (0%)
Strand = Plus / Minus
Query: 1 ttatgaggttttaacacctattttgttgaccttttcacaggtgtttgttagtattgcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttatgaggttttaacacctattttgttgaccttttcacaggtgtttgttagtattgcatg 532
Query: 61 gctgcttctggggtcctttaatgtactgttcatctctctccaatcatagtcgtctcttga 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 531 gctgcttctggggtcctttaatgtactgttaatctctctccaatcatagtcgtctcttga 472
Query: 121 acttggcaagatgtaaagggcttacccaggtttgaggatggggagagagccagacacaga 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 471 acttggcaagatgtaaagggctgacccaggtttgaggatggggagagagccagacacaga 412
Query: 181 gaagaaataacaccattccttttgtacttcactccaaac--aaaaaaaggagtctcatat 238
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 411 gaagaaataacaccattccttttgtacttcactccaaacaaaaaaaaaggagtctcatat 352
Query: 239 ttagagtaagatattttaaacagacatgtctaagtgctatattacaatttttatcttaag 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttagagtaagatattttaaacagacatgtctaagtgctatattacaatttttatcttaag 292
Query: 299 tctgagtgggaaggccaaaatatctgccactaaaagacatttatgagctcgttatagcta 358
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tatgagtgggaaggccaaaatatctgccactaaaagacatttatgagctcgttatagcta 232
Query: 359 ttctccctgatatctcagtactgaatatacc 389
|||||||||||||||||||||||||||||||
Sbjct: 231 ttctccctgatatctcagtactgaatatacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 791
Length adjustment: 9
Effective length of query: 380
Effective length of database: 782
Effective search space: 297160
Effective search space used: 297160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
