BAC Information

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BAC

Clone NameMSMg01-375N15
Chromosome11 (Build37)
Map Location 95,621,647 - 95,622,144
singlet/doubletsinglet
Overlap geneZfp652
Upstream geneA430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik
Downstream geneEG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375N15.T7 (MSMg01no375_n15.b1)MSMg01-375N15.TJ (MSMg01no375_n15.g1)
ACCAG481307AG481308
length768767
length of high quality
(start - end)		507 (71 - 577)498 (75 - 572)
definitionCHROMAT_FILE: MSMg01no375_n15.b1 PHD_FILE: MSMg01no375_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:34 2005CHROMAT_FILE: MSMg01no375_n15.g1 PHD_FILE: MSMg01no375_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCANAGGATTGGCCAGCAAGCACCTGCATTTATCCCTCTCTGC
TTCCTGGATGCTAATGCAATGTGTCCAGGTCCCTCATGTCCTTGCTCCCA
TGCTGTGGCCGTCTGAATGAGATGTCATCCATAAGTCTCTGGCATTTTGA
CACTTGGACCTCAGTTGGTAGATGTCTGGGAAGGACTAAGAGGGTGTGGC
CTTGATGGAGGAGGTGTGTTACCAGAGGGTGGTCTAAGGGCTTCCGAAGC
CCCCCAACATCCCCGGAGGTGTGACCTCTCAGCCTCCAGGTTGAGGGTCT
GAAAGGTGAGCTATCAGCACCAAGCCTGCCTGCCTGCCTGCCTGCTGCCA
CTCTCCCCATGGAGATGGTGATAGACTCCTATCCCTCTGAAACTGTAAGC
CCTGAATAAACCTCGTTGCCCTGGTCACGGTGTCTAATCACAGCAATAGA
AAAGTAACTAAGACATGTGCCTTCCAGATTAAATATGTGTTTGAATAGGG
GGGTAAAATAAACCTTCCTTCTTTTTTTCTAAGATTAATTTATTTTAATT
AAAGGAGGCCACAACCCCAAAGAGGGCTTCTGATCCCATTACAAAGGTTG
TGAACCCCCCTGGGGCTTTCTGGGAAATTAAACCCCACCCCCTGGTAAAC
ATATAAGGCTTCTAAATGGTGGACAATTTTCTCCCCCCCCTAAATTTTCC
CTTTTCATTTTCTTTATG

NCCGATGAAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGTCCGTTCTATCAAAGTCAGAGTC
TTCATTTGCAGCAGCCACATGGAAGCAGCCCAAAGACCCCAGTGTGACCC
ACTCGTCCCGTGGGAGCTTCCCTACCTGACTGACTGACCATGTACACACT
TCACTCACAGGCCAAGACACTGAATGTTCACTCAACAAAACACGTTCAAC
TTTCTAGACCTCTTTAACCATGTCCATTCACAATCTCCTGAGCTATGTGA
CTCGCCATAGGGAGCCCCAAAGGAATTAGGGATGATAATGAATCCAATGA
TTCAAGCAAAAATCTTACTGCATTAGTAATCTTTTTTTGTAGTTGTTTTT
GGTTTTTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTATCCTGGAACTC
ACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCC
TCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACGCCCGGCTAATAATC
TTTTACTTCTTAATAATTTTTCCCAGGTCTTCACTTGACATAAAGCTATC
ACGCTACCTACCTCTGAATTCCGATTTACTTGGCACATTGGCTAACTGGG
CTTAATGGGTAAAGTTAACGTCATTCCCACGCTTAAGATAAAAAAAACGG
CCCATTTTGAAGCTACCCCTCGGACCTGGGTTCTCTTTTATATAAAACAC
TTTGATCTGCCCCGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_n15.g1 MSMg01no375_n15.g1 CHROMAT_FILE:
MSMg01no375_n15.g1 PHD_FILE: MSMg01no375_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:34 2005
         (498 letters)



>mm_chr11_95621623_95622520
          Length = 898

 Score =  901 bits (466), Expect = 0.0
 Identities = 490/498 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtccgttctatcaaagtcagagtcttcatttgcagcagccacatggaagcagcccaaa 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 522 ctgtccgttctatcaaagtcagagtcctcatttgcagcagccacatggaagcagcccaaa 463

                                                                       
Query: 61  gaccccagtgtgacccactcgtcccgtgggagcttccctacctgactgactgaccatgta 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaccccagtctgacccactcgtcccgtgggagcttccctacctgactgactgaccatgta 403

                                                                       
Query: 121 cacacttcactcacaggccaagacactgaatgttcactcaacaaaacacgttcaactttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cacacttcactcacaggccaagacactgaatgttcactcaacaaaacacgttcaactttc 343

                                                                       
Query: 181 tagacctctttaaccatgtccattcacaatctcctgagctatgtgactcgccatagggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tagacctctttaaccatgtccattcacaatctcctgagctatgtgactcgccatagggag 283

                                                                       
Query: 241 ccccaaaggaattagggatgataatgaatccaatgattcaagcaaaaatcttactgcatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccccaaaggaattagggatgataatgaatccaatgattcaagcaaaaatcttactgcatt 223

                                                                       
Query: 301 agtaatctttttttgtagttgtttttggtttttcgagacagggtttctctgtgtagtcct 360
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 222 agtaatctttttttgttgttgtttttggtttttcgagacagggtttctctgtgtagccct 163

                                                                       
Query: 361 ggctatcctggaactcactttgtagaccaggctggcctcgaactcagaaatccgcctgcc 420
           |||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 162 ggctgttctggaactcactttgtagaccaggctggcctggaactcagaaatccgcctgcc 103

                                                                       
Query: 421 tctgcctcccgagtgctgggattaaaggcgtgcaccaccacgcccggctaataatctttt 480
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tctgcctcccaagtgctgggattaaaggcgtgcaccaccacgcccggctaataatctttt 43

                             
Query: 481 acttcttaataatttttc 498
           ||||||||||||||||||
Sbjct: 42  acttcttaataatttttc 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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