BAC Information

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BAC

Clone NameMSMg01-376E08
Chromosome11 (Build37)
Map Location 65,502,860 - 65,718,869
singlet/doubletdoublet
Overlap geneMap2k4, Zkscan6, Dnahc9
Upstream geneLOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd
Downstream geneGm879, LOC668323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376E08.T7 (MSMg01no376_e08.b1)MSMg01-376E08.TJ (MSMg01no376_e08.g1)
ACCAG481626AG481627
length762764
length of high quality
(start - end)		512 (43 - 554)449 (74 - 522)
definitionCHROMAT_FILE: MSMg01no376_e08.b1 PHD_FILE: MSMg01no376_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:08 2005CHROMAT_FILE: MSMg01no376_e08.g1 PHD_FILE: MSMg01no376_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,502,860 - 65,503,349)(65,718,421 - 65,718,869)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTACTTCCTTCCCAGAGAGTGAACTGGTAGAGGCCTCAGCAGGTGTCAG
ACATGCCTATCTGAAAGGCTGCCATTTAGGATCTTTATCCTGCTCAAGTA
TGCCTCTCCAACAGACTGCCTCTTTCTCACGTACAACATCAACTGGGCCC
AGCTGTCTCAGCTTTCTGAACACCAGAGCACAGGAGAGATTCAGGGTTAC
AAATTGTGGTAAGTAGCATCCCTGGTAATGTTAGGGTTCCCAATGTGAAA
AACAAGGCAGAATACTAGACTGAGCAAAAGCCGCATGGCGACAACGAACT
GTGGGGAAGGGAAAGAGTTAGAAACTGAGGACTTGGCCCATGATGTCGAG
AAGCAAAGCGTTGTGATTTGGTGTTTTGCTGCCTGCAGGAAATCTTCATC
AAGGCACATTGCTACTAGCTAATTCTCCCTGTTAGTGAGTTACGATGGCT
CAAGTCCCAGGCTTGGGGCCAAGAGGGAATCTATAGCTGCTACAAGCTGT
TCTGGACAAAATGCCAGAATCAAAAACATCTGTAAACTTTGCCCTCAGTA
CTGTTTTCTTCCCTCAACCCGGGGGGTTGGTGGGAGGGAAAGCAACCAGT
TGGGAGCAACCCTTCTATGACAGGTGGCAGAACCCCGGAACCTTTCCCAA
AAAAAAAAAAGGCTGGTAAAAGAAAAAAAAAAAAATTTCGGCCCGGGCCC
CAAAATTTAAAN

TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATCCCAAGTTCCGGCTCATCCTTCAT
ACCAAGCTGGCCAACCCTCACTACCAGCCTGAGCTGCAGGCTCAGGCTAC
CCTGATCAACTTTACGGTGACCAGGGATGGCCTGGAGGACCAGCTGCTGG
CTGCTGTGGTCAGCATGGAGAGACCAGACCTGGAACAGCTGAAGGTGTGT
CAGAGATTCACTAAGGAAAGAAAGAAGGGGGGTGCCCTGCACTGGGTCCT
ACAGTGTAGCCACTAGGGGAACAGGAGTGGGCAAGTTTCTCCTGGAATCC
AGTTGAGTGGGTTCTTCAAGACATTGGTTGAGTTCCAACCCTACCTAGTC
ACCTGGGAATACCCACTTGGGAAAGGAAGAATGTGCTTAGCTGAAGAACA
GAAGTGGGAAAGCTGGGAGAGGTGACCTTGCTGTCCCCAAGAGCAGGGCC
TGGCTTGGNGCTCTTATATGAGAATGTCTGATCTCACTACTCACGTGGAG
CCATCCAAAGTCAAGTAGGATTTAAATATGCCTGGGGTAACAGAACCAGG
GTCTCTTTTGCAGGGGTTGGGTCCTAACTTGCTTACAGGAAATGCCCCTC
AGTCTTAATAGCCTTCCCCCGGGTTTCATCCTTTTCTTTAAAGGCTGTGT
ACCAAACTTCTCATACACTCGGCTCCCTCTTTTTAGTCCCTTTTCTTTTC
TCTCTTTCTCGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_e08.b1 MSMg01no376_e08.b1 CHROMAT_FILE:
MSMg01no376_e08.b1 PHD_FILE: MSMg01no376_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:08 2005
         (512 letters)



>mm_chr11_65502638_65503549
          Length = 912

 Score =  932 bits (482), Expect = 0.0
 Identities = 488/490 (99%)
 Strand = Plus / Plus

                                                                       
Query: 23  agagagtgaactggtagaggcctcagcaggtgtcagacatgcctatctgaaaggctgcca 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 agagagtgaactggtagaggcctcagcaggtgtcagacatgcctatctgaaaggctgcca 282

                                                                       
Query: 83  tttaggatctttatcctgctcaagtatgcctctccaacagactgcctctttctcacgtac 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tttaggatctttatcctgctcaagtatgcctctccaacagactgcctctttctcacgtac 342

                                                                       
Query: 143 aacatcaactgggcccagctgtctcagctttctgaacaccagagcacaggagagattcag 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aacatcaactgggcccagctgtctcagctttctgaacaccagagcacaggagagattcag 402

                                                                       
Query: 203 ggttacaaattgtggtaagtagcatccctggtaatgttagggttcccaatgtgaaaaaca 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ggttacaaattgtggtaagtagcatccctggtaatgttagggttcccaatgtgaaaaaca 462

                                                                       
Query: 263 aggcagaatactagactgagcaaaagccgcatggcgacaacgaactgtggggaagggaaa 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aggcagaatactagactgagcaaaagccgcatggcgacaacgaactgtggggaagggaaa 522

                                                                       
Query: 323 gagttagaaactgaggacttggcccatgatgtcgagaagcaaagcgttgtgatttggtgt 382
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gagttagaaactgaggacctggcccatgatgtcgagaagcaaagcgttgtgatttggtgt 582

                                                                       
Query: 383 tttgctgcctgcaggaaatcttcatcaaggcacattgctactagctaattctccctgtta 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tttgctgcctgcaggaaatcttcatcaaggcacattgctactagctaattctccctgtta 642

                                                                       
Query: 443 gtgagttacgatggctcaagtcccaggcttggggccaagagggaatctatagctgctaca 502
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 643 gtgagttacgatggctcaagtcccaggcttggggccaagggggaatctatagctgctaca 702

                     
Query: 503 agctgttctg 512
           ||||||||||
Sbjct: 703 agctgttctg 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no376_e08.g1 MSMg01no376_e08.g1 CHROMAT_FILE:
MSMg01no376_e08.g1 PHD_FILE: MSMg01no376_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:08 2005
         (449 letters)



>mm_chr11_65718221_65719069
          Length = 849

 Score =  847 bits (438), Expect = 0.0
 Identities = 446/449 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcccaagttccggctcatccttcataccaagctggccaaccctcactaccagcctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aatcccaagttccggctcatccttcataccaagctggccaaccctcactaccagcctgag 590

                                                                       
Query: 61  ctgcaggctcaggctaccctgatcaactttacggtgaccagggatggcctggaggaccag 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 589 ctgcaggctcaggctaccctgatcaacttcacggtgaccagggatggcctggaggaccag 530

                                                                       
Query: 121 ctgctggctgctgtggtcagcatggagagaccagacctggaacagctgaaggtgtgtcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ctgctggctgctgtggtcagcatggagagaccagacctggaacagctgaaggtgtgtcag 470

                                                                       
Query: 181 agattcactaaggaaagaaagaaggggggtgccctgcactgggtcctacagtgtagccac 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agattcaccaaggaaagaaagaaggggggtgccctgcactgggtcctacagtgtagccac 410

                                                                       
Query: 241 taggggaacaggagtgggcaagtttctcctggaatccagttgagtgggttcttcaagaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 taggggaacaggagtgggcaagtttctcctggaatccagttgagtgggttcttcaagaca 350

                                                                       
Query: 301 ttggttgagttccaaccctacctagtcacctgggaatacccacttgggaaaggaagaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttggttgagttccaaccctacctagtcacctgggaatacccacttgggaaaggaagaatg 290

                                                                       
Query: 361 tgcttagctgaagaacagaagtgggaaagctgggagaggtgaccttgctgtccccaagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgcttagctgaagaacagaagtgggaaagctgggagaggtgaccttgctgtccccaagag 230

                                        
Query: 421 cagggcctggcttggngctcttatatgag 449
           ||||||||||||||| |||||||||||||
Sbjct: 229 cagggcctggcttggggctcttatatgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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