Query= MSMg01no377_f18.b1 MSMg01no377_f18.b1 CHROMAT_FILE:
MSMg01no377_f18.b1 PHD_FILE: MSMg01no377_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:30 2005
(467 letters)
>mm_chr11_32255743_32256609
Length = 867
Score = 845 bits (437), Expect = 0.0
Identities = 458/465 (98%), Gaps = 2/465 (0%)
Strand = Plus / Minus
Query: 4 ggaattc-cattggactgggtatgctggattttcatttgcttactcaggatgggccaaga 62
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ggaattcacattggactgggtatgctggattttcatttgcttactcaggatgggccaaga 608
Query: 63 cagggatgcaggggctgatggtggagtcccctccctccagccccctcttccaacacgtga 122
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 607 cagggatgc-ggggctgatggtggaatcccctccctccagccccctcttccaacacgtga 549
Query: 123 agaaggtttaggccagcaaaaaagagggaagagcctcgcagcttaagtatggtgcagagg 182
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aggaggtttaggccagcaaaaaagagggaagagcctcgcagcttaagtatggtgcagagg 489
Query: 183 gaccacagcttctagtgaaactcagcctgcatgaacctggaagggacagagtcctggggg 242
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 488 gaccacagcttctagtgaaactcagcctgcatgagcctggaagggacagagtcctggggg 429
Query: 243 aggggggacagccatagcctgggtttggggacactactccaaggatagaaaaactccaag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aggggggacagccatagcctgggtttggggacactactccaaggatagaaaaactccaag 369
Query: 303 gacaaacatcccagcatcttgtgttccaagggattctgtacaaatgcttttgaatcctgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gacaaacatcccagcatcttgtgttccaagggattctgtacaaatgcttttgaatcctgg 309
Query: 363 caaagccaccagctttggggaagagatatcttatgggtagcaaaggacagcaccagaccc 422
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 308 caaagccaccagctttggagaagagaaatcttatgggtagcaaaggacagcaccagaccc 249
Query: 423 agggactgtaaaagggaagaaaagagggcaactgagtcatgagaa 467
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agggactgtaaaagggaagaaaagagggcaactgagtcatgagaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_f18.g1 MSMg01no377_f18.g1 CHROMAT_FILE:
MSMg01no377_f18.g1 PHD_FILE: MSMg01no377_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:30 2005
(446 letters)
>mm_chr11_32243917_32244762
Length = 846
Score = 801 bits (414), Expect = 0.0
Identities = 435/442 (98%)
Strand = Plus / Plus
Query: 5 cttccatcacaggatttccagaggtcaaacgcaggtcatcagtcttggcagcaagcatct 64
|||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 205 cttccaccacaggatttccagaggtcaaacgcaggtcatcagtcttgtcaacaagcatct 264
Query: 65 ttaccctcggagcttcctcgccgacctccccttccctttgatttttgtatgttgctctaa 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 ttaccctcggagcttcctcgccgacctccccctccctttgatttttgtatgttgctctaa 324
Query: 125 gtagttttctgtttctatgataaaacaccatgaccaaaaccaaattggagtggaagggat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtagttttctgtttctatgataaaacaccatgaccaaaaccaaattggagtggaagggat 384
Query: 185 ttgtttcatcttccaactcacaggttaaccatcactgagagaagtcagggcagactgaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtttcatcttccaactcacaggttaaccatcactgagagaagtcagggcagactgaag 444
Query: 245 cagagccatgaaggaacactggtcactggctagctcccctgccttgcctttctgatgcaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagagccatgaaggaacactggtcactggctagctcccctgccttgcctttctgatgcaa 504
Query: 305 ccaaggcccatctgactagggaatgacactgcccacagtgggctgggtcctctttatcca 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaaggcccatctgactagggaatggcactgcccacagtgggctgggtcctctttatcca 564
Query: 365 ttagctgttaagaaactgagctacagccatgtgcacaggccaatctgatggaggaaattc 424
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 565 ttagctgttaagaaactgtgctacagccatgtgcacaggccaatctgatggaggtaattc 624
Query: 425 ttcaggtgagattctctcttcc 446
||||||||||||||||||||||
Sbjct: 625 ttcaggtgagattctctcttcc 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
