Query= MSMg01no378_l05.b1 MSMg01no378_l05.b1 CHROMAT_FILE:
MSMg01no378_l05.b1 PHD_FILE: MSMg01no378_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:15 2005
(395 letters)
>mm_chr11_112930900_112931694
Length = 795
Score = 576 bits (298), Expect = e-169
Identities = 343/360 (95%), Gaps = 6/360 (1%)
Strand = Plus / Plus
Query: 5 gaattcattttt---atttgaggcaatttatagttctcactctgccccatgaagtctcac 61
|||||||||||| | | |||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcatttttaaca--taaggcaatttatagtcctcactctgccccatgaagtctcac 262
Query: 62 tttggccaatttagtgggggaggggagagagaatagtgggtcagaaccctaggctggagt 121
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 263 tttggccaatttagtgggggaagggagagagaatagtgggtcagaaccctgggctggagt 322
Query: 122 cttcttgaggatacatggttagagggtgtcctggagagaggaatggtccctgtccccctg 181
|||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 323 cttcttgaggttacacggttagagggtgtcctggagagaggaatggtccccgtccccctg 382
Query: 182 ggcttctgtaaaaatcatactgagacctaaactatgacagtggtcctgactggccttctg 241
| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 383 gacttctgt-aaaatcatactgagacctaaactatgccagtggtcctgactggccttctg 441
Query: 242 tgaggcctggacactgctaaagggaatccatggtacataggtagtaacctgagaatctac 301
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgaggcctggacactactaaagggaatccatggtacataggtagtaacctgagaatctac 501
Query: 302 atttaaagttatatctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 361
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atttaaagttatatcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_l05.g1 MSMg01no378_l05.g1 CHROMAT_FILE:
MSMg01no378_l05.g1 PHD_FILE: MSMg01no378_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:15 2005
(455 letters)
>mm_chr11_113099043_113099898
Length = 856
Score = 814 bits (421), Expect = 0.0
Identities = 452/473 (95%), Gaps = 18/473 (3%)
Strand = Plus / Minus
Query: 1 ttggctcctccagcaccatgtctgcttggacactgccatgcttcctggcatgataatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 ttggctcctccagcaccatgtctgcttggacactgccatgcttcctggcatgataatgga 789
Query: 61 ctgaacctctgaaatgctaacagttcagtgttttatgtataagagttgccttggtcttgg 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ctgaacctctgaaacgctaacagttcagtgttttatgtataagagttgccttggtcttgg 729
Query: 121 tgtctcttcacagcaataaaaccctaccgaaggcacccctagagggttttttgag----- 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tgtctcttcacagcaataaaaccctaccgaaggcacccctagagggttttttgagttttt 669
Query: 176 ------------tttttttttttttgacatagaggcttttcttaaaagtctgttcaaggc 223
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tttttttttttttttttttttttttgacatagaggcttttcttaaaagtctgttcaaggc 609
Query: 224 atgggaccaacagggagtctctcatgtgtgttaactaccaagagattcttatgggtggtc 283
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 608 atgggaccaacagggagtctctcaggtgtgttaactaccaagagattcttatgggtggtc 549
Query: 284 acatgatcatgggtggtcacatgatcccagaacgccattctatctctgatgcccataaat 343
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 548 acatgatcatgggtggtcacacgatcccagaacgccattctatctctgatgcccataaat 489
Query: 344 ccaggtcttgagactggatttcaaaggct-cttacccatcaaggaagacatgacaaaacc 402
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 488 ccaggtcttgagactggatttcaaaggctccttacccatcaaggaagacatgacaaaacc 429
Query: 403 aagtacacgtggttaggacagagttctcttttctctgatatggacacctcaga 455
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aagtacacgtggttaggacagagttctcttttctctgatatggacacctcaga 376
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 856
Length adjustment: 10
Effective length of query: 445
Effective length of database: 846
Effective search space: 376470
Effective search space used: 376470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
