BAC Information

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BAC

Clone NameMSMg01-379I23
Chromosome11 (Build37)
Map Location 69,220,154 - 69,220,341
singlet/doubletsinglet
Overlap geneJmjd3
Upstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88
Downstream geneDnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379I23.T7 (MSMg01no379_i23.b1)MSMg01-379I23.TJ (MSMg01no379_i23.g1)
ACCAG484142AG484143
length860813
length of high quality
(start - end)		193 (42 - 234)121 (71 - 191)
definitionCHROMAT_FILE: MSMg01no379_i23.b1 PHD_FILE: MSMg01no379_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:21 2005CHROMAT_FILE: MSMg01no379_i23.g1 PHD_FILE: MSMg01no379_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACAAGGTTTACAGGTAACAGGTACTGACAAGGGGCTCACCTGGCGCTCT
GGCGGCGCTGAACCCTTGCGCTCGGGGCCCCAAGCATCTCCATGCAGGGT
ATTCCACAGCCCTGGCTTAGTCAGCTGAAATGGGGGGCTAATAGCCAGGC
CAGGCAGCGGTGGTGGTGGAGGGGGTGGTGGTGNTGTNTNTNTTTTTTTT
TTTTNTTTTNTNTTTTNTTTTTTTTTTTCTCTTTTTTTTTTCTNTTTNTT
NTTTNTTNTTTTTTTTTTTTTTTNNNTTNNNNNNNNTCNNTTNTCTNTTT
CTCTTTTCCTTTCTCTTCCCCCTTCCTCCTCCCTTTCTTTTCCTTCCCTC
CCTTCCTCCTTTTTCTTTCCTTTCTCTCCCCTCTCTTTTTTCTTTCTCTT
CCCTCTCTTCCTCTTCTTTCTCCCTCTTTCTCCTTCTCCTCCCCTTCCTC
CTTTCTCCTCCTCCTTCTTCCTCTTTTTCTTCTCCTTCTCTCCTTCCCTT
CTTCTTCCTTTCTCACTCCTCTTTCTTCTCCCTTTCTTTCCTCCCTCTCC
TTCCCCTTCCCTTTTTTCTTTTTCCTTCTCTTTCTCTCTTCTCTCTCTCT
CTCCTTTCTCCTTCCTTTCCCTCTTTTCCCTCCCCCTTCTTTCCTCTTTT
TCTTTCCTTTCCCTTTTCCTCTTTTTNTTTTTTTCCTTTTTTTTCTCTCT
TCCCTTTTTTTCTTTTTTTTCTTTCCTTCCCTACATTTCCTTCTTTTCCT
CTTTACCAACCCTTTACCTATCTTCCCTTCCCTCTACCCACTCCTACCAA
CCATTTAATT

ACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGACAGCTAGAGCTATATGGAAAAACAA
ACAAACAAACAAACAAACCGTGTTTTGAAATAACCAAACCAAGTTTTTTT
TTTTTTTTAAAGTGTGTGAGTGTGTGTGTGTGTGGGGGTGCCCCCCNCCC
CCCCCCCNNCCCCCCCCCCCCCCCCCCTCCCCTCCCCTCTCCCCCCCTCT
CCTCCCCCTTTCTCCCTCTCCTCCCCTTTCCTCCCCTTCCTCTTTTCTCC
CCCTCCCTTTCCCCTTCCTTTCCCCCCCCCCTTTTCCCCCCCCCCCCCCC
CTCCCTTCCTCCCCTCCTTCCCCTCTCCCCCCCCTTCTTCCCTTTTCCCT
TTTTTCCTTCCCTTCCCCCTTTCCCCTTTTTCCCCCTTTTCCCCCCTTTT
CCCCCCCCTTTCCCCCTCCTTCCCCTTTCTCTTCCCCTCCCTCCTTTATT
CCCTTCCTTCCCTTTTTCCCCTTCTTCCCCCCCCTTTCCCCCTTTTCCTC
CCTCCCCCCCCCCTTCCCTTCTTCTTCCCCTTTCCCCCTCTTCTTCCTCT
CTCTCTTCCCCCCCCCTTCCCCCCCCTTTTTTCCCCCCCCCCCCCCCCTT
CTATCCCTCCCCTCCTTTTTTTATTCCCCCTTCCCCCCCCCCCCCTTTCT
TTTCCTTTCTTCCCCTACCCTTTCCCTCCCCCCCCCCTTCCTTTCCCCTT
TCCCTTCTTCTTTTCCCCCCCCCTCCCCCCCTTCCTCCCCTATTTCCCCC
TTCCCTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_i23.b1 MSMg01no379_i23.b1 CHROMAT_FILE:
MSMg01no379_i23.b1 PHD_FILE: MSMg01no379_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:21 2005
         (193 letters)



>mm_chr11_69219950_69220542
          Length = 593

 Score =  333 bits (172), Expect = 5e-96
 Identities = 184/188 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacaaggtttacaggtaacaggtactgacaaggggctcacctggcgctctggcgg 64
           ||||||||||||   | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaaggggaaaaggtaacaggtactgacaaggggctcacctggcgctctggcgg 264

                                                                       
Query: 65  cgctgaacccttgcgctcggggccccaagcatctccatgcagggtattccacagccctgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgctgaacccttgcgctcggggccccaagcatctccatgcagggtattccacagccctgg 324

                                                                       
Query: 125 cttagtcagctgaaatggggggctaatagccaggccaggcagcggtggtggtggaggggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttagtcagctgaaatggggggctaatagccaggccaggcagcggtggtggtggaggggg 384

                   
Query: 185 tggtggtg 192
           ||||||||
Sbjct: 385 tggtggtg 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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