XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TGGAGTTCCGGGGTGAGCGAGCACTGAATGAAGATGTTCAATAATTGTCC
AGGAGACAATGGGTACCCAAGTCCCACAACAGCCTAATGAGTCCACGAAG
ACAGAGGGGGTTCTTTGAGCAGAAACTGAGGGACTTGAGGAAGTAAAAGT
TTGTGATAATAGCAAATATCAGCTAAATTCCATTGTCAGCCATTTCTGAA
GGTTCATGCCACATGTCTCACCTATGTGTGGATATAGTTGGGGCATAAGA
GGTGCTTAGCACTTGTTCATTGGATCCACGGAAGAATCAATACTCCAAGC
ACTTCAAACAGATTAACACTTAGTAGAAGTTCTTGTAGCCATCAAGCCAG
GCAACACAGCTCATGAAAATTTTGTCTTTGTCCTTACATGGAGGGTGATC
CTATGAAAGAATATATTAATATATAATGGAGTATATATACACCAAAAATA
AAGGTTATTTTTTTGTCACTGAATTCTTCCAAGATTATCTTAAAGAATAT
GTTTTTGGATCAGGACAAATTTAAATTCAGTAAAGAATTTTCTCTGTATA
GATATACAATAGTAAATTTTTGCATATATTGGTTTTGTGTGGGGTATATG
TGATTGGTAGAAAGAAAGTGATTATTTGCGTACACCTGTTTTTCTCCTCG
CCACGCCCTTTTTTTACATTTGGCACTCTTTCCCCCCCTCTTTTCCCACC
ACTCA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTTTGAGTTAAAACAAGAGTCCCAGGTTT
TATACACTCCAGTCTTCAAAATACCAATTTTTGTTTTGTTTTTTGTTGTT
GTTGTTGTTTTTTGGAGACAGGATTTTCCTTAATGTAGCCCTGGCTATCC
TGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAAGATCTGCC
TGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGTGTGCATCACCACCACCT
GGCTACCAAGGATATTTTAATCTCCCTCTTCTCTTGGCTCCTGCTTCATA
TGTTCAATCTGCAGCTGGAGGCAACATTTGGGGAGATTGTGGAAACATTA
GAAGGGGACCTATTGGGGGAAAGCATATGACTGGAGATGGCTGTCTGTCT
GGGAATGTACTGCCCTGGCCACTTCCTTTCTTGAGTGCTGCTTCCTGCTT
ACTCAGAAAGACCTCTCCTTCACCAAATTCTTCCACCATCAAGATGTGTA
CAAATACATGGGACCCACAGACCATGGAATGGTGATATTCAAAACATAAG
CCAAAATAAATTCCTCTTCTCTTAGCTGCTTCTCTCACGTATTTTGGTGA
CAGCAATGATAAAGTAACTCTTACTCCCCCCCGTAAGTTGACACAAGCAC
AATGTCTTTCCTGCATAACTCAGGTTTAGGGTCCCCTATATACTCTG

Query= MSMg01no380_i17.b1 MSMg01no380_i17.b1 CHROMAT_FILE:
MSMg01no380_i17.b1 PHD_FILE: MSMg01no380_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:39 2005
         (568 letters)



>mm_chr11_66630888_66631855
          Length = 968

 Score =  915 bits (473), Expect = 0.0
 Identities = 538/581 (92%), Gaps = 36/581 (6%)
 Strand = Plus / Minus

                                                                       
Query: 21  ggggtgagcgagcactgaatgaagatgttcaataattgtccaggagacaatgggtaccca 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ggggtgagcgagcactgaatgaagatgttcaataattgtccaggagacaatgggtaccca 577

                                                                       
Query: 81  agtcccacaacagcctaatgagtccacgaagacagagggggttctttgagcagaaactga 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 agtcccacaacagcctaatgagtccacgaagacagagggggttctttgagcagaaactga 517

                                                                       
Query: 141 gggacttgaggaagtaaaagtttgtgataatagcaaatatcagctaaattccattgtcag 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gggacttgaggaagtaaaagtttgtgataatagcaaatatcagctaaattccattgtcag 457

                                                                       
Query: 201 ccatttctgaaggttcatgccacatgtctcacctatgtgtggatatagttggggcataag 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ccatttctgaaggttcatgccacatgtctcacctatgtgtggatatagttggggcataag 397

                                                                       
Query: 261 aggtgcttagcacttgttcattggatccacggaagaatcaatactccaagcacttcaaac 320
           |||||||||||||  | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 396 aggtgcttagcacaagctcattggatccacggaaggatcaatactccaagcacttcaaac 337

                                                                       
Query: 321 agattaacacttagtagaagttcttgtagccatcaagccaggcaacacagctcatgaaaa 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agattaacacttagtagaagttcttgtagccatcaagccaggcaacacagctcatgaaaa 277

                                                                       
Query: 381 ttttgtctttgtccttacatggagggtgatcctatgaaagaatatattaatatata---- 436
           |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
Sbjct: 276 ttttgtctttatccttacatggagggtgatcctatgaaagaatgtattaatatatatata 217

                                                                       
Query: 437 ---------------------------atggagtatatatacac--caaaaataaaggtt 467
                                      ||  | |||||||||||  ||||||||||||||
Sbjct: 216 tatatatatatatatatatatatatatat--a-tatatatacacaccaaaaataaaggtt 160

                                                                       
Query: 468 atttttttgtcactgaattcttccaagattatcttaaagaatatgtttttggatcaggac 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 atttttttgtcactgaattcttccaagattatcttaaagaatatgtttttggatcaggac 100

                                                    
Query: 528 aaatttaaattcagtaaagaattttctctgtatagatatac 568
           | |||||||||||||||||||||||||||||||||||||||
Sbjct: 99  acatttaaattcagtaaagaattttctctgtatagatatac 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)