Query= MSMg01no381_a20.b1 MSMg01no381_a20.b1 CHROMAT_FILE:
MSMg01no381_a20.b1 PHD_FILE: MSMg01no381_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:20 2005
(484 letters)
>mm_chr11_17006197_17007080
Length = 884
Score = 839 bits (434), Expect = 0.0
Identities = 467/478 (97%), Gaps = 3/478 (0%)
Strand = Plus / Plus
Query: 9 tctcaaatgataaatcaattttgtaaggctgaaaacaatctggaaaatgcagccttcaga 68
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 209 tctcaaatgataaatcaattttgtaaggccgaaaacaatctggaaaatgcagccttcaga 268
Query: 69 aatgagggggtgaaccaaaggtaaattttaggact-gaggaactaaggcatgtccaagca 127
| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct: 269 attgagggggtgaaccaaaggtaaattttagga-tcgaggaactaaggcatgcccaagca 327
Query: 128 catccaagtagtcactgttacaggagctcccgggcttgcagggctctgcacctggtggag 187
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tatccaagtagtcactgttacaggagctcccgggcttgcagggctctgcacctggtggag 387
Query: 188 atggtggggtgggttgaaggaaaatgagccccgtaggcccacagaaagtggcactgttag 247
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 388 atggtgggatgggttgaaggaaaatgagccccgtaggcccacagaaagtggcagtgttag 447
Query: 248 gagatgtggccttccttgttagaacaggcgtgaccttgttagaggaagtgtgtcactttg 307
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 448 gagatgtggccttccttgttagaacaggcatgaccttgttagaggaagtgtgtcactttg 507
Query: 308 aggtttcaaatgctcaagccaggcccagtgtcagtttctttgtctgctgcctgcccatcc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aggtttcaaatgctcaagccaggcccagtgtcagtttctttgtctgctgcctgcccatcc 567
Query: 368 agatgtaaaactctaggcacatcctccaacaccacggccaatatgtttcctgtcatgatg 427
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 568 agatgtaaaactctaggcacatcctccagcaccacggccaatatgtttcctgtcatgatg 627
Query: 428 atagtggactaaacctctgaaactgtaaaccagcgccaattaaatattttc-ttatta 484
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 628 atagtggactaaacctctgaaactgtaaaccagcgccaattaaatattttccttatta 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_a20.g1 MSMg01no381_a20.g1 CHROMAT_FILE:
MSMg01no381_a20.g1 PHD_FILE: MSMg01no381_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:20 2005
(614 letters)
>mm_chr11_17161809_17162824
Length = 1016
Score = 1093 bits (565), Expect = 0.0
Identities = 601/614 (97%), Gaps = 2/614 (0%)
Strand = Plus / Minus
Query: 1 atactggagacagagctttagaaagaaaatgaaaagaccatttacttctgagtaaggtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 atactggagacagagctttagaaagaaaatgaaaagaccatttacttctgagtaaggtaa 755
Query: 61 gtcagtgaatcttagcatgcaagtccagaggagcaacctcccagcctcccttgacaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gtcagtgaatcttagcatgcaagtccagaggagcaacctcccagcctcccttgacaaaat 695
Query: 121 gcttggggaaagagggaagactccataccagccacacatcaagccctagagactttcaca 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gcatggggaaagagggaagactccataccagccacacatcaagccctagagactttcaca 635
Query: 181 gctctgacaacataaccacaacaccacatatcaatacgctaaacccatgttcaactggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gctctgacaacataaccacaacaccacatatcaatacgctaaacccatgttcaactggat 575
Query: 241 tcaaaggtacatgcacttgggaagtggagtgaggggctccgatcgagaggcccttagcta 300
||||||||||||||||||||||||| ||| |||||| |||| || || ||||||||||||
Sbjct: 574 tcaaaggtacatgcacttgggaagtagagcgaggggttccggtctaggggcccttagcta 515
Query: 301 taggcaagttcaaggccagtctctgctccaggagacacaatctcagaaataaaaataaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 taggcaagttcaaggccagtctctgctccaggagacacaatctcagaaataaaaataaat 455
Query: 361 gggggacgggtgcactttttaaagcatcctgttgaaagcaaagatttttttttaaatgga 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gggggacgggtacactttttaaagcatcctgttgaaagcaaagatttttttttaaatgga 395
Query: 421 agtctgataaattcatcctataatgtcaacaaagtgagtttctccaaaaaattctaaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agtctgataaattcatcctataatgtcaacaaagtgagtttctccaaaaaattctaaatt 335
Query: 481 ttacttagctttttaaaacttagatgttgttctaaccattccttgtattaaacttaaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttacttagctttttaaaacttagatgttgttctaaccattccttgtattaaacttaaaaa 275
Query: 541 acagaaatcctagatat--aanaacctttatcaactaacactaaaagtacttttcaagct 598
||||||||||||||||| || || ||||||||||||||||||||| |||||||||||||
Sbjct: 274 acagaaatcctagatataaaaaaatctttatcaactaacactaaaattacttttcaagct 215
Query: 599 caagctcataaatg 612
||||||||||||||
Sbjct: 214 caagctcataaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1016
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1006
Effective search space: 607624
Effective search space used: 607624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
